| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yojK [H]
Identifier: 158315515
GI number: 158315515
Start: 4406517
End: 4407698
Strand: Reverse
Name: yojK [H]
Synonym: Franean1_3722
Alternate gene names: 158315515
Gene position: 4407698-4406517 (Counterclockwise)
Preceding gene: 158315516
Following gene: 158315510
Centisome position: 49.07
GC content: 70.81
Gene sequence:
>1182_bases ATGTTCGTGGTACCACCGCTGGCCGGGCATGTGAACCCGGCCACCGCGGTAGCGGGGGAACTGGCCGCGCGCGGTCACCA GGTGGCGATTGCCGGTCATGCCGACGTCATCGCGCCGATCGTACCGGCGAAGGTCGACCTGCTCGCGCTGTCCGGGAGAC CGGCCGACGCCGCGGAGCGGACCAGAATAGAGGCCTCGTCCCAGCGGCTTCGTGGCGTAGCCGCGCTGAAGTTCCTCTGG CAGGACTTTCTCCTCCCCCTCGGCGCGGCGATGATCCCGGAGATCGACGCCATGGCCAGCGAGTTCCGTCCCGACGTGGT GGTCGCCGACCAGCAGGCTGTCGGCGCGTCGGTCGTGGCACGCCGACGAGGCACACGGCTAGCCGTCCTCGCCACCACGC CCGCCGAGTTCGACGACCCCTACGCCGGGCTCGACCGCGTCGGCGCCTGGATCGCCGGACTGCTCCAGGACTTCCAACTC GCCCACGGCATCCCCCCGGAACAGGCCGCGGCCACGGACCCCCGGTTCTCCGACCAGCTCACCCTCATCTGCTCCGTGCC AGGCCTACTCAAAGCGGGCCGTTTCGCGGAATCAGTGGTCTTCGTCGGCTGCGCGGCCGCTCGGCGTCGTGCCGACCCGG ACTTCCCCTGGACATGGCTGGACGAAACCCGGGCCACCGTCCTGATCTCACTCGGCACGGTCACCCGCGAGGCCGGCCGC CGTTTCCTGCGCGCCGCCGCCGAGGCGATGCTGTCGATGGCCACCGACGTCCAGGCCGTCGTCGTCGCGCCACCGGGGAC CGCCACCGACCTGGCCCTGGCGGCGCCCGCCGATCTCCTCGTCACACCACGCGTACCACAGCTCGCGTTGCTGCCACACC TGGCCGCGGTGATCTGCCACGCCGGCAACAACACCGTGTGCGAATCGCTCGCACACGGAGTCCCACTCGTCGTCGCACCC GTCCGCGACGACCAGCCCATCATCGCGGAACAGGTAGAACGAGCCGGAGCAGGCACCCGGATCCGATTCGGCCGTGCCGG CGCGGCAACGATCGCCGATGCCCTGCGAAACGTGCTCGACGATCCGACCTACCGAGCGACCGCCGGGCGACTGCGACAGC AGTTCACCGCCGCCGGCGGCACGGCCACAGCAGCGGCCCACATCGAGCAACTCGCCAGCTAG
Upstream 100 bases:
>100_bases GCGAGAAAGTACCGCCGCCGGACCTCAGGGGCCCGGACCGCAACCCCGACGGTCGACTCCTGAGAACAACCCGGAACTCT GGTGTGACATGGCAAGAATA
Downstream 100 bases:
>100_bases TCGCGGTAGGGACCGCCCTTACGGGCGGCCCCCCGCACAGATCCCAGCGAGCGGAACTACCGCACTGGGCTCCTGCCTCG GGTATTGGCGTCGAGCCGAA
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MFVVPPLAGHVNPATAVAGELAARGHQVAIAGHADVIAPIVPAKVDLLALSGRPADAAERTRIEASSQRLRGVAALKFLW QDFLLPLGAAMIPEIDAMASEFRPDVVVADQQAVGASVVARRRGTRLAVLATTPAEFDDPYAGLDRVGAWIAGLLQDFQL AHGIPPEQAAATDPRFSDQLTLICSVPGLLKAGRFAESVVFVGCAAARRRADPDFPWTWLDETRATVLISLGTVTREAGR RFLRAAAEAMLSMATDVQAVVVAPPGTATDLALAAPADLLVTPRVPQLALLPHLAAVICHAGNNTVCESLAHGVPLVVAP VRDDQPIIAEQVERAGAGTRIRFGRAGAATIADALRNVLDDPTYRATAGRLRQQFTAAGGTATAAAHIEQLAS
Sequences:
>Translated_393_residues MFVVPPLAGHVNPATAVAGELAARGHQVAIAGHADVIAPIVPAKVDLLALSGRPADAAERTRIEASSQRLRGVAALKFLW QDFLLPLGAAMIPEIDAMASEFRPDVVVADQQAVGASVVARRRGTRLAVLATTPAEFDDPYAGLDRVGAWIAGLLQDFQL AHGIPPEQAAATDPRFSDQLTLICSVPGLLKAGRFAESVVFVGCAAARRRADPDFPWTWLDETRATVLISLGTVTREAGR RFLRAAAEAMLSMATDVQAVVVAPPGTATDLALAAPADLLVTPRVPQLALLPHLAAVICHAGNNTVCESLAHGVPLVVAP VRDDQPIIAEQVERAGAGTRIRFGRAGAATIADALRNVLDDPTYRATAGRLRQQFTAAGGTATAAAHIEQLAS >Mature_393_residues MFVVPPLAGHVNPATAVAGELAARGHQVAIAGHADVIAPIVPAKVDLLALSGRPADAAERTRIEASSQRLRGVAALKFLW QDFLLPLGAAMIPEIDAMASEFRPDVVVADQQAVGASVVARRRGTRLAVLATTPAEFDDPYAGLDRVGAWIAGLLQDFQL AHGIPPEQAAATDPRFSDQLTLICSVPGLLKAGRFAESVVFVGCAAARRRADPDFPWTWLDETRATVLISLGTVTREAGR RFLRAAAEAMLSMATDVQAVVVAPPGTATDLALAAPADLLVTPRVPQLALLPHLAAVICHAGNNTVCESLAHGVPLVVAP VRDDQPIIAEQVERAGAGTRIRFGRAGAATIADALRNVLDDPTYRATAGRLRQQFTAAGGTATAAAHIEQLAS
Specific function: Unknown
COG id: COG1819
COG function: function code GC; Glycosyl transferases, related to UDP-glucuronosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UDP-glycosyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002213 - InterPro: IPR006326 [H]
Pfam domain/function: PF00201 UDPGT [H]
EC number: NA
Molecular weight: Translated: 41068; Mature: 41068
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFVVPPLAGHVNPATAVAGELAARGHQVAIAGHADVIAPIVPAKVDLLALSGRPADAAER CEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCEEEEEECCCCCCHHHH TRIEASSQRLRGVAALKFLWQDFLLPLGAAMIPEIDAMASEFRPDVVVADQQAVGASVVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCHHHHHHHHH RRRGTRLAVLATTPAEFDDPYAGLDRVGAWIAGLLQDFQLAHGIPPEQAAATDPRFSDQL HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE TLICSVPGLLKAGRFAESVVFVGCAAARRRADPDFPWTWLDETRATVLISLGTVTREAGR EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHH RFLRAAAEAMLSMATDVQAVVVAPPGTATDLALAAPADLLVTPRVPQLALLPHLAAVICH HHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHC AGNNTVCESLAHGVPLVVAPVRDDQPIIAEQVERAGAGTRIRFGRAGAATIADALRNVLD CCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHC DPTYRATAGRLRQQFTAAGGTATAAAHIEQLAS CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure MFVVPPLAGHVNPATAVAGELAARGHQVAIAGHADVIAPIVPAKVDLLALSGRPADAAER CEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCEEEEEECCCCCCHHHH TRIEASSQRLRGVAALKFLWQDFLLPLGAAMIPEIDAMASEFRPDVVVADQQAVGASVVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCHHHHHHHHH RRRGTRLAVLATTPAEFDDPYAGLDRVGAWIAGLLQDFQLAHGIPPEQAAATDPRFSDQL HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE TLICSVPGLLKAGRFAESVVFVGCAAARRRADPDFPWTWLDETRATVLISLGTVTREAGR EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHH RFLRAAAEAMLSMATDVQAVVVAPPGTATDLALAAPADLLVTPRVPQLALLPHLAAVICH HHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHC AGNNTVCESLAHGVPLVVAPVRDDQPIIAEQVERAGAGTRIRFGRAGAATIADALRNVLD CCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHC DPTYRATAGRLRQQFTAAGGTATAAAHIEQLAS CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]