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The map label for this gene is ydhC [H]

Identifier: 158315506

GI number: 158315506

Start: 4393983

End: 4394669

Strand: Reverse

Name: ydhC [H]

Synonym: Franean1_3711

Alternate gene names: 158315506

Gene position: 4394669-4393983 (Counterclockwise)

Preceding gene: 158315507

Following gene: 158315505

Centisome position: 48.93

GC content: 71.91

Gene sequence:

>687_bases
GTGGCCGGGATCGTGACCTCGGCTGGGCGGGTTCTTGAGGTGCTCCGCAGACTCATTCTCAACAACACCCTCCTGCCCGG
TGCCCGGCTGGCCGAGACCGAGCTGGCCGAACAGCTGGGGGTCAGCCGGACCCCGGTCCGCGAGGCCCTGCGCCAGCTGG
CCGCCGAAGGGCTGGTCGAGCTCTCCCCCAATCGGGGCGCCCGGGTCGCCGGCTGGTCGCCGGCCGAGCTGGAGAGCGTC
TTCGAGCTGCGTTCAACGCTCGAACCGCGGCTGACCGGGATGGCCGCGGAACGGGCCGACGAGGGCGACCTCGCCGAGCT
GGAGAAGCTGGCGAACGAGATGTCGGCCGTCGGCTCGCCTGGTCCGGAGCAGGACCTGGAGGCTCTCATTCCGCTGAACG
CCGCGTTCCACGAGCGGCTGGTGAAGCTGGCCGACGCGCCGGCCTTCGCGGCGGCCCTGGCCGGGGCGGTCCGCACACCG
CTGATCATGCGGAACTTCCACGCCTACGACGACGACTCGATGCGGCGCAGCCTGGCCCACCACATCGAGATAGTCGCCGC
CATGCGCGCCGGCGATCCGCAGTGGGCCACCGCGGTGATGGTCGCCCATCTCCGCAACGCCCGGGCCGTCATGCTGCGGA
CCACCTTTCCCACCGCGGACCCCGGCGGCGTGACTCGGGGTCGATAG

Upstream 100 bases:

>100_bases
TCACCGTGGGCACCTACGAGATGGTGGCCTTCGCGCTCCGCTCGTTCGGGGTCGAGGCCGACGACGATCTCCTCCCGTAC
CTCCGCCGGGGCCAGTGACC

Downstream 100 bases:

>100_bases
CCCAGGCACGCCGCCGCGGCACAGGGCGGTCACGACGGAACCAGGAGGCGTGGATGCGTCTGAAGGACAAGGTCGCGGTC
ATCACGGGCGCAGGCTCGGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAGIVTSAGRVLEVLRRLILNNTLLPGARLAETELAEQLGVSRTPVREALRQLAAEGLVELSPNRGARVAGWSPAELESV
FELRSTLEPRLTGMAAERADEGDLAELEKLANEMSAVGSPGPEQDLEALIPLNAAFHERLVKLADAPAFAAALAGAVRTP
LIMRNFHAYDDDSMRRSLAHHIEIVAAMRAGDPQWATAVMVAHLRNARAVMLRTTFPTADPGGVTRGR

Sequences:

>Translated_228_residues
MAGIVTSAGRVLEVLRRLILNNTLLPGARLAETELAEQLGVSRTPVREALRQLAAEGLVELSPNRGARVAGWSPAELESV
FELRSTLEPRLTGMAAERADEGDLAELEKLANEMSAVGSPGPEQDLEALIPLNAAFHERLVKLADAPAFAAALAGAVRTP
LIMRNFHAYDDDSMRRSLAHHIEIVAAMRAGDPQWATAVMVAHLRNARAVMLRTTFPTADPGGVTRGR
>Mature_227_residues
AGIVTSAGRVLEVLRRLILNNTLLPGARLAETELAEQLGVSRTPVREALRQLAAEGLVELSPNRGARVAGWSPAELESVF
ELRSTLEPRLTGMAAERADEGDLAELEKLANEMSAVGSPGPEQDLEALIPLNAAFHERLVKLADAPAFAAALAGAVRTPL
IMRNFHAYDDDSMRRSLAHHIEIVAAMRAGDPQWATAVMVAHLRNARAVMLRTTFPTADPGGVTRGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=210, Percent_Identity=27.6190476190476, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787821, Length=198, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081914, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24494; Mature: 24363

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGIVTSAGRVLEVLRRLILNNTLLPGARLAETELAEQLGVSRTPVREALRQLAAEGLVE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
LSPNRGARVAGWSPAELESVFELRSTLEPRLTGMAAERADEGDLAELEKLANEMSAVGSP
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
GPEQDLEALIPLNAAFHERLVKLADAPAFAAALAGAVRTPLIMRNFHAYDDDSMRRSLAH
CCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
HIEIVAAMRAGDPQWATAVMVAHLRNARAVMLRTTFPTADPGGVTRGR
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
AGIVTSAGRVLEVLRRLILNNTLLPGARLAETELAEQLGVSRTPVREALRQLAAEGLVE
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
LSPNRGARVAGWSPAELESVFELRSTLEPRLTGMAAERADEGDLAELEKLANEMSAVGSP
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
GPEQDLEALIPLNAAFHERLVKLADAPAFAAALAGAVRTPLIMRNFHAYDDDSMRRSLAH
CCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
HIEIVAAMRAGDPQWATAVMVAHLRNARAVMLRTTFPTADPGGVTRGR
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]