| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158315306
Identifier: 158315306
GI number: 158315306
Start: 4167903
End: 4168769
Strand: Reverse
Name: 158315306
Synonym: Franean1_3506
Alternate gene names: NA
Gene position: 4168769-4167903 (Counterclockwise)
Preceding gene: 158315308
Following gene: 158315303
Centisome position: 46.41
GC content: 72.66
Gene sequence:
>867_bases TTGTGGCAGCCACTGCTGTTCACCGTCGTGCTCGGCACCGCCGTGGTTCTCGTCGGCTGGCTGCCGCTGCTCCTGGTCGC CGTACTCGTTCTCGGCCGGCGCGCGGGCCTGGCCCGCGCCTCCTTCGAGAGACGTCAGCGTGAACGCCACAACGAGGCAC TCGCCGGCATCGACGACAAGTCCAGCCCGGAGCTGAGCCGTTTCGTCGCCACGCTGCTCACCAGGGACGGCTGTGTCGAC GCGGAGGTCATCCCCCTTGGGGGGAGACATGGCCTCGACGTCCTCGCCACCACCTCCGCCGGCGAACGGATCGCGGTGGC GTGCCACCGCCACACCGGCGAGACGACCATCAGCCCGAACCTCATCAGACGGTTCCGCAGCCACCTCCTCGACCGCTACC ACACACCCCCGACCACCGCCGTGATCGTCACCTCGGGGCGGCTGACCGATCCCGCCCGCGTCTACGCCGAGGAACACGGC GTCGTCGTCGTGGAACGTCACCGGCTGGGGCTGTGGGCGTTGGGTAGCCCACCGCCCGTGCGCGGACTGCGAGCCCGCAC GCTGCCCGCCGGGGCGAGCCGCGCCGATCATCCGCTGCCCACCAGGGCCAGCGAGCGCGTTCTCTGGCTCACTCCCGTGC CCACCCTCGTCGTCCTGTGCACCGCGGGACTTGGCCCCGCCCTGCTGTTCCTGGCCGTGGCCCTCGCCACCGCGACGCTC ACCGCCGGCGCCGACGCCCACTTCGACCCTGAACCGCCACCGCTCCGGTGGCCGTGGTGGCCGCTGTGGGCGGAGGCCTC GGCGAAGCCCGCCGCCGCCGCCCTCGCCGCGACCATCCTGCTGGCCCTTCACGCACAGGCCGGCTGA
Upstream 100 bases:
>100_bases GCCGGCGGGCAGTCCAACCCAAGGCAATAATCAACACATAAACAACAAAAAATTACAGGTGTTCAGGGAGCGCCTTGAGC TCGCGGCACCCTGGGACGAC
Downstream 100 bases:
>100_bases GCCCTGGCCGGCTGACCCCAACCCCACGACGCATTGGACGGGCCGGGCCCGGTCAGGCGTCGAGGACGATGTCGGTGACC GGGGCCGTGACGCAGGGGAG
Product: restriction endonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MWQPLLFTVVLGTAVVLVGWLPLLLVAVLVLGRRAGLARASFERRQRERHNEALAGIDDKSSPELSRFVATLLTRDGCVD AEVIPLGGRHGLDVLATTSAGERIAVACHRHTGETTISPNLIRRFRSHLLDRYHTPPTTAVIVTSGRLTDPARVYAEEHG VVVVERHRLGLWALGSPPPVRGLRARTLPAGASRADHPLPTRASERVLWLTPVPTLVVLCTAGLGPALLFLAVALATATL TAGADAHFDPEPPPLRWPWWPLWAEASAKPAAAALAATILLALHAQAG
Sequences:
>Translated_288_residues MWQPLLFTVVLGTAVVLVGWLPLLLVAVLVLGRRAGLARASFERRQRERHNEALAGIDDKSSPELSRFVATLLTRDGCVD AEVIPLGGRHGLDVLATTSAGERIAVACHRHTGETTISPNLIRRFRSHLLDRYHTPPTTAVIVTSGRLTDPARVYAEEHG VVVVERHRLGLWALGSPPPVRGLRARTLPAGASRADHPLPTRASERVLWLTPVPTLVVLCTAGLGPALLFLAVALATATL TAGADAHFDPEPPPLRWPWWPLWAEASAKPAAAALAATILLALHAQAG >Mature_288_residues MWQPLLFTVVLGTAVVLVGWLPLLLVAVLVLGRRAGLARASFERRQRERHNEALAGIDDKSSPELSRFVATLLTRDGCVD AEVIPLGGRHGLDVLATTSAGERIAVACHRHTGETTISPNLIRRFRSHLLDRYHTPPTTAVIVTSGRLTDPARVYAEEHG VVVVERHRLGLWALGSPPPVRGLRARTLPAGASRADHPLPTRASERVLWLTPVPTLVVLCTAGLGPALLFLAVALATATL TAGADAHFDPEPPPLRWPWWPLWAEASAKPAAAALAATILLALHAQAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30886; Mature: 30886
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWQPLLFTVVLGTAVVLVGWLPLLLVAVLVLGRRAGLARASFERRQRERHNEALAGIDDK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC SSPELSRFVATLLTRDGCVDAEVIPLGGRHGLDVLATTSAGERIAVACHRHTGETTISPN CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCHH LIRRFRSHLLDRYHTPPTTAVIVTSGRLTDPARVYAEEHGVVVVERHRLGLWALGSPPPV HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCEEECCCCCCC RGLRARTLPAGASRADHPLPTRASERVLWLTPVPTLVVLCTAGLGPALLFLAVALATATL CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHH TAGADAHFDPEPPPLRWPWWPLWAEASAKPAAAALAATILLALHAQAG HCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MWQPLLFTVVLGTAVVLVGWLPLLLVAVLVLGRRAGLARASFERRQRERHNEALAGIDDK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC SSPELSRFVATLLTRDGCVDAEVIPLGGRHGLDVLATTSAGERIAVACHRHTGETTISPN CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCHH LIRRFRSHLLDRYHTPPTTAVIVTSGRLTDPARVYAEEHGVVVVERHRLGLWALGSPPPV HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCEEECCCCCCC RGLRARTLPAGASRADHPLPTRASERVLWLTPVPTLVVLCTAGLGPALLFLAVALATATL CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHH TAGADAHFDPEPPPLRWPWWPLWAEASAKPAAAALAATILLALHAQAG HCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA