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The map label for this gene is sodF1 [H]

Identifier: 158315297

GI number: 158315297

Start: 4161143

End: 4161754

Strand: Reverse

Name: sodF1 [H]

Synonym: Franean1_3497

Alternate gene names: 158315297

Gene position: 4161754-4161143 (Counterclockwise)

Preceding gene: 158315298

Following gene: 158315294

Centisome position: 46.33

GC content: 67.16

Gene sequence:

>612_bases
GTGGCCGTGTACACGTTGCCGGACCTGCAGTACGACTACGCCGCCCTCGAACCGTCGATCAGCGGCCAGATCCTCGAACT
GCACCACGACAAGCACCACGCGACCTACGTCGCCGGGGCCAACACCACCCTGGACAAACTCGCCGACGCCCGCGAGAAGG
GCGACTTCGCCGCCATCGTCGGCCTGGAGAAGACCCTCGCGTTCAACGTCTCCGGGCACATCCTGCACAGCATCTACTGG
CAGAACCTCTCCCCCGACGGCGGCGACAAGCCCGACGGCGCCCTCGGCGACGCCATCACCGAGTCCTTCGGCTCCTTCGA
CGCCTTCAAGGCACAGCTCACCGCCGTCACCACCACCGTCCAGGGCTCCGGCTGGGGCATCCTCGCCTACGACCAGCTCT
CCGACCGCCTCCTCGTCGAGCAGGTCTACGACCACCAGAGCAACGTCGGCATCGGCAACACCACGCTGCTCGCCTTCGAC
GCCTGGGAGCACGCCTGGTACCTGCAGTACAAGAACGTCAAGGCCGACTACGTGACCGCCCTGTGGGACATCGTCAACTG
GGCCGACGTCGCCGCCCGCTACGCCGCCGTGAAGCAGGCGCCGCAGACCTAG

Upstream 100 bases:

>100_bases
CCGCGCGACCTCCTCGCCGCGATCCGGAACGCCTACGTCACCGATCCCGTCTGACCCGTCCGCGCCGCCGGACATCCACC
GCACAGCGAAGGAGCCCCAC

Downstream 100 bases:

>100_bases
CCACCGGGCACACTCGCTGGTCGGCCGTTGCCTCCCGCGCGCGGCCGGCCAGCGGGGTCAGCCGGCGAGGCGGCGGGCGC
CGAGCGGACGCTGCGCTCCT

Product: superoxide dismutase

Products: NA

Alternate protein names: FeSOD I; SOD2 [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAVYTLPDLQYDYAALEPSISGQILELHHDKHHATYVAGANTTLDKLADAREKGDFAAIVGLEKTLAFNVSGHILHSIYW
QNLSPDGGDKPDGALGDAITESFGSFDAFKAQLTAVTTTVQGSGWGILAYDQLSDRLLVEQVYDHQSNVGIGNTTLLAFD
AWEHAWYLQYKNVKADYVTALWDIVNWADVAARYAAVKQAPQT

Sequences:

>Translated_203_residues
MAVYTLPDLQYDYAALEPSISGQILELHHDKHHATYVAGANTTLDKLADAREKGDFAAIVGLEKTLAFNVSGHILHSIYW
QNLSPDGGDKPDGALGDAITESFGSFDAFKAQLTAVTTTVQGSGWGILAYDQLSDRLLVEQVYDHQSNVGIGNTTLLAFD
AWEHAWYLQYKNVKADYVTALWDIVNWADVAARYAAVKQAPQT
>Mature_202_residues
AVYTLPDLQYDYAALEPSISGQILELHHDKHHATYVAGANTTLDKLADAREKGDFAAIVGLEKTLAFNVSGHILHSIYWQ
NLSPDGGDKPDGALGDAITESFGSFDAFKAQLTAVTTTVQGSGWGILAYDQLSDRLLVEQVYDHQSNVGIGNTTLLAFDA
WEHAWYLQYKNVKADYVTALWDIVNWADVAARYAAVKQAPQT

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=50.253807106599, Blast_Score=210, Evalue=8e-55,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=50.253807106599, Blast_Score=210, Evalue=8e-55,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=39.5939086294416, Blast_Score=146, Evalue=1e-35,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=37.0192307692308, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=35.5670103092784, Blast_Score=119, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=196, Percent_Identity=47.4489795918367, Blast_Score=188, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=48.2233502538071, Blast_Score=187, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=42.7184466019417, Blast_Score=162, Evalue=3e-41,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=45.1776649746193, Blast_Score=185, Evalue=2e-47,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22248; Mature: 22117

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVYTLPDLQYDYAALEPSISGQILELHHDKHHATYVAGANTTLDKLADAREKGDFAAIV
CEEEECCCCCCCHHHCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCEEEEE
GLEKTLAFNVSGHILHSIYWQNLSPDGGDKPDGALGDAITESFGSFDAFKAQLTAVTTTV
ECCEEEEECCCHHEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHEEEEEEEEE
QGSGWGILAYDQLSDRLLVEQVYDHQSNVGIGNTTLLAFDAWEHAWYLQYKNVKADYVTA
ECCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHH
LWDIVNWADVAARYAAVKQAPQT
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AVYTLPDLQYDYAALEPSISGQILELHHDKHHATYVAGANTTLDKLADAREKGDFAAIV
EEEECCCCCCCHHHCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCEEEEE
GLEKTLAFNVSGHILHSIYWQNLSPDGGDKPDGALGDAITESFGSFDAFKAQLTAVTTTV
ECCEEEEECCCHHEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHEEEEEEEEE
QGSGWGILAYDQLSDRLLVEQVYDHQSNVGIGNTTLLAFDAWEHAWYLQYKNVKADYVTA
ECCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHH
LWDIVNWADVAARYAAVKQAPQT
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9555880; 10231572; 12000953; 8898904 [H]