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The map label for this gene is yliC [C]

Identifier: 158315278

GI number: 158315278

Start: 4135581

End: 4136531

Strand: Reverse

Name: yliC [C]

Synonym: Franean1_3478

Alternate gene names: 158315278

Gene position: 4136531-4135581 (Counterclockwise)

Preceding gene: 158315279

Following gene: 158315277

Centisome position: 46.05

GC content: 71.71

Gene sequence:

>951_bases
ATGCACCCGGCCATCCGTCTGGTGGCGGTCCGCCTGCTCGGCGCCGTCCTGGTCATCTGGGGCGCGGTCACCGCCGCGTT
CGTGGTGCTCCAGCTCATACCCGGGGACCCGATCAACGCGATCATCGGAACGCACGCGCTGGTCGGGCCGGAACAGCGTG
CTCAGCTCCGGGCCGAATACGGCCTGGACGACTCGCTGTTCGCGCAGTACCTGGACCACATGGGACGGCTGGCCACCGGT
CGCCTCGGCGACTCCTACCAGCTCCAGCAGCCGGTCTGGACAGTGATCACCGACCAGGCCGGCGCCACCGTCGAGCTCGC
CGGATGGGCGATGTTCTCCGCGGTGGTGCTCGCCGTGGCCGTGACCCTGCTGACCTCCGGGCGGGCCCGCTGGCCGCGCC
GGATCAGCTCGCTGCTGGAGCTGGTCGTCGTCTCCACACCCCAGTTCTGGCTGGGGATCCTGCTGCTCACCGTCTTCTCG
TTCCATCTCGGCTGGTTCCCGGTGGCCGACACCGGGGACCCGCGTTCGCTGATCCTGCCGGTGGTGACCCTCGCGCTGCC
GATCGCGGCGGTGCTCATCCAGGTGATGCGCGAGGGGCTGCTCTCCGCTCTGGAGGCGCCCTTCGTGCTGACCGCGCGGG
CCCGCGGCAGCGCCGAGTACTCGGTGCGCGCGCGACACGCGCTGCGGCACGCGAGCCTGCCCGCGCTGACCCTGTCGGGC
TGGTTCGTCGGCACGCTGCTCGGCGGGGCCGTGATCACGGAGAACGTCTTCGCCCGCTCCGGCATCGGGCGGGTGACCCT
GCAGGCGGTCGCCAACCGGGACTTTCCAGTCGTGCAGGGGGTGGTCGCGCTGTCGGCGGTGGTGTTCGTCGCCGTCAGCG
CCCTGCTGGAACTGCTGTACGCGGTGGTCGACCCGCGGCTGCGCAAGCGGACGGGGGTGGCCGCGGCATGA

Upstream 100 bases:

>100_bases
TCAAGAACGCGACCGTCGGGGTCAACAAGAAGGTGCATGGCCTGCGGCTGAGCATCGCCACCTGGCCCGAGTTCTACCCC
GCCTGGGTGCAGGCCGACTG

Downstream 100 bases:

>100_bases
GCGTCCCCACGCTTCGCATCCCGGGCCGGCCGGCGCGGTCGGCCCGGCTGGGCCGGCCGCGCCCGGGTGTGGTGATCGCC
GCGCTCGTGCTGCTGTTGTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MHPAIRLVAVRLLGAVLVIWGAVTAAFVVLQLIPGDPINAIIGTHALVGPEQRAQLRAEYGLDDSLFAQYLDHMGRLATG
RLGDSYQLQQPVWTVITDQAGATVELAGWAMFSAVVLAVAVTLLTSGRARWPRRISSLLELVVVSTPQFWLGILLLTVFS
FHLGWFPVADTGDPRSLILPVVTLALPIAAVLIQVMREGLLSALEAPFVLTARARGSAEYSVRARHALRHASLPALTLSG
WFVGTLLGGAVITENVFARSGIGRVTLQAVANRDFPVVQGVVALSAVVFVAVSALLELLYAVVDPRLRKRTGVAAA

Sequences:

>Translated_316_residues
MHPAIRLVAVRLLGAVLVIWGAVTAAFVVLQLIPGDPINAIIGTHALVGPEQRAQLRAEYGLDDSLFAQYLDHMGRLATG
RLGDSYQLQQPVWTVITDQAGATVELAGWAMFSAVVLAVAVTLLTSGRARWPRRISSLLELVVVSTPQFWLGILLLTVFS
FHLGWFPVADTGDPRSLILPVVTLALPIAAVLIQVMREGLLSALEAPFVLTARARGSAEYSVRARHALRHASLPALTLSG
WFVGTLLGGAVITENVFARSGIGRVTLQAVANRDFPVVQGVVALSAVVFVAVSALLELLYAVVDPRLRKRTGVAAA
>Mature_316_residues
MHPAIRLVAVRLLGAVLVIWGAVTAAFVVLQLIPGDPINAIIGTHALVGPEQRAQLRAEYGLDDSLFAQYLDHMGRLATG
RLGDSYQLQQPVWTVITDQAGATVELAGWAMFSAVVLAVAVTLLTSGRARWPRRISSLLELVVVSTPQFWLGILLLTVFS
FHLGWFPVADTGDPRSLILPVVTLALPIAAVLIQVMREGLLSALEAPFVLTARARGSAEYSVRARHALRHASLPALTLSG
WFVGTLLGGAVITENVFARSGIGRVTLQAVANRDFPVVQGVVALSAVVFVAVSALLELLYAVVDPRLRKRTGVAAA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=32.7974276527331, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789965, Length=322, Percent_Identity=34.1614906832298, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1789888, Length=313, Percent_Identity=33.8658146964856, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1787497, Length=310, Percent_Identity=29.6774193548387, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=30.421686746988, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1788504, Length=356, Percent_Identity=22.752808988764, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787550, Length=253, Percent_Identity=25.6916996047431, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33726; Mature: 33726

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPAIRLVAVRLLGAVLVIWGAVTAAFVVLQLIPGDPINAIIGTHALVGPEQRAQLRAEY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHC
GLDDSLFAQYLDHMGRLATGRLGDSYQLQQPVWTVITDQAGATVELAGWAMFSAVVLAVA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCEEEHHHHHHHHHHHHHHH
VTLLTSGRARWPRRISSLLELVVVSTPQFWLGILLLTVFSFHLGWFPVADTGDPRSLILP
HHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
VVTLALPIAAVLIQVMREGLLSALEAPFVLTARARGSAEYSVRARHALRHASLPALTLSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEHHHH
WFVGTLLGGAVITENVFARSGIGRVTLQAVANRDFPVVQGVVALSAVVFVAVSALLELLY
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVVDPRLRKRTGVAAA
HHHCHHHHHHCCCCCC
>Mature Secondary Structure
MHPAIRLVAVRLLGAVLVIWGAVTAAFVVLQLIPGDPINAIIGTHALVGPEQRAQLRAEY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHC
GLDDSLFAQYLDHMGRLATGRLGDSYQLQQPVWTVITDQAGATVELAGWAMFSAVVLAVA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCEEEHHHHHHHHHHHHHHH
VTLLTSGRARWPRRISSLLELVVVSTPQFWLGILLLTVFSFHLGWFPVADTGDPRSLILP
HHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
VVTLALPIAAVLIQVMREGLLSALEAPFVLTARARGSAEYSVRARHALRHASLPALTLSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEHHHH
WFVGTLLGGAVITENVFARSGIGRVTLQAVANRDFPVVQGVVALSAVVFVAVSALLELLY
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVVDPRLRKRTGVAAA
HHHCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]