| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yhbW [C]
Identifier: 158315267
GI number: 158315267
Start: 4097712
End: 4098776
Strand: Reverse
Name: yhbW [C]
Synonym: Franean1_3467
Alternate gene names: 158315267
Gene position: 4098776-4097712 (Counterclockwise)
Preceding gene: 158315271
Following gene: 158315265
Centisome position: 45.63
GC content: 74.93
Gene sequence:
>1065_bases ATGCGCGTCGGACTGGGATATCTGAACATGGCCCCGGCGGGCGACGCCCCGACCGCCCGGGCCCTCTACGCCGACTTCCT GCACGACGCCCGGTGGGCGCAGGCCGCGGGCTTCGCCGGCATCTGGGTCACCGAGCACCACTTCTCCACCTACAGCCTGA CCTCGTCGCCGCTGCTCCTGCTGGCACAGGCGGCGGTCGTCGCGCCCACGCTCCGGCTGGGCACGTCGATCCTGGTGCTG CCCTTCTGGGACCCGGTGCGGCTGGCCGCCGACCTGCTCACCCTGGACGCGCTGTCCGGTGGGCGGCTCGACGTCGGCAT CGGCCGCGGGTACCAGCCGCACGAGTTCCACGGGTTCGGCCGGGACCCGGCGGACAGCCGGGCCGCCTTCACCGAGGCGG TCGACCTCCTCCAGCAGCTGTTCACCGGCCACGACGAGCGGTTCGCGGGCCGCTTCCACCGGATCGACACGCCGGTCACC CTGCTGCCCCGCCCGACCCAGCGGCCCCACCCGCCGATCTGGACGTCGGCCACCAGCCCGGAGTCGCTGCGCTTCGCCGC GGACCGGGGCTTCCACTTCATGCTGCCCGCCGGCACGACGTTCCCGCAGGTCGTGGAGCGCCGGCGCTGGATCGAGGAGG CCGGCGGGCTGCCGGCCGGGCGTGAGTTCCAGGTCAACCGGTTCGTGTACCTGGGCGACGAGGAGGGCCGGGCGGCGGTC GTCCGGGAGATCGCCCGCCAGTTGCAGACCTCGGCCGCGCTGACGGAGGGGACGGGCCCGGTGGCGGGCGCCGCTCCCGC TCCCGAGCGGCCGGATCCCGCGATGGAGGAGAAGGCGCGCGAGGTCCTCATCACCGGGTCCGCGTCGGAGGTGCTCGAGC AGTTCCTGGCCCTGGCCGAGACGGGCATCACCTACGTCATCGCCAGCTTCGCCTTCGGGTATCTCGACCTTCGGGTCAGC CGGCGCTCCCGGGAGCGGTTCGCCGCCGAGGTGCTGCCCCGTCTCCCGGTGCCGGGGTCGGCCCCGGCCGCGCTGCCGCC GCCGGCCCTGCCCGCGGCCCGGTGA
Upstream 100 bases:
>100_bases GGCTTGCCGCGCCCGGCCCCTTCGAGGGGGCGGGCGCCGTCCACCGTGCGCTTTAGCGCGGGACAAGCCGGCCGTCAGAC TCCGCCGGGACCATCGCGGC
Downstream 100 bases:
>100_bases GCCGCTACTCGCTCGCCGGGGCCTTCGCCGCCGGGCCCGTGGCGGCGAAGGCGCGCAGGAAGGTCGCGGTCGCGGCCCGC GCGGTGTGCTGGATCTGGGT
Product: luciferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 354; Mature: 354
Protein sequence:
>354_residues MRVGLGYLNMAPAGDAPTARALYADFLHDARWAQAAGFAGIWVTEHHFSTYSLTSSPLLLLAQAAVVAPTLRLGTSILVL PFWDPVRLAADLLTLDALSGGRLDVGIGRGYQPHEFHGFGRDPADSRAAFTEAVDLLQQLFTGHDERFAGRFHRIDTPVT LLPRPTQRPHPPIWTSATSPESLRFAADRGFHFMLPAGTTFPQVVERRRWIEEAGGLPAGREFQVNRFVYLGDEEGRAAV VREIARQLQTSAALTEGTGPVAGAAPAPERPDPAMEEKAREVLITGSASEVLEQFLALAETGITYVIASFAFGYLDLRVS RRSRERFAAEVLPRLPVPGSAPAALPPPALPAAR
Sequences:
>Translated_354_residues MRVGLGYLNMAPAGDAPTARALYADFLHDARWAQAAGFAGIWVTEHHFSTYSLTSSPLLLLAQAAVVAPTLRLGTSILVL PFWDPVRLAADLLTLDALSGGRLDVGIGRGYQPHEFHGFGRDPADSRAAFTEAVDLLQQLFTGHDERFAGRFHRIDTPVT LLPRPTQRPHPPIWTSATSPESLRFAADRGFHFMLPAGTTFPQVVERRRWIEEAGGLPAGREFQVNRFVYLGDEEGRAAV VREIARQLQTSAALTEGTGPVAGAAPAPERPDPAMEEKAREVLITGSASEVLEQFLALAETGITYVIASFAFGYLDLRVS RRSRERFAAEVLPRLPVPGSAPAALPPPALPAAR >Mature_354_residues MRVGLGYLNMAPAGDAPTARALYADFLHDARWAQAAGFAGIWVTEHHFSTYSLTSSPLLLLAQAAVVAPTLRLGTSILVL PFWDPVRLAADLLTLDALSGGRLDVGIGRGYQPHEFHGFGRDPADSRAAFTEAVDLLQQLFTGHDERFAGRFHRIDTPVT LLPRPTQRPHPPIWTSATSPESLRFAADRGFHFMLPAGTTFPQVVERRRWIEEAGGLPAGREFQVNRFVYLGDEEGRAAV VREIARQLQTSAALTEGTGPVAGAAPAPERPDPAMEEKAREVLITGSASEVLEQFLALAETGITYVIASFAFGYLDLRVS RRSRERFAAEVLPRLPVPGSAPAALPPPALPAAR
Specific function: Unknown
COG id: COG2141
COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial luciferase oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1789551, Length=199, Percent_Identity=27.1356783919598, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011251 - InterPro: IPR016048 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 38372; Mature: 38372
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVGLGYLNMAPAGDAPTARALYADFLHDARWAQAAGFAGIWVTEHHFSTYSLTSSPLLL CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHH LAQAAVVAPTLRLGTSILVLPFWDPVRLAADLLTLDALSGGRLDVGIGRGYQPHEFHGFG HHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC RDPADSRAAFTEAVDLLQQLFTGHDERFAGRFHRIDTPVTLLPRPTQRPHPPIWTSATSP CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCC ESLRFAADRGFHFMLPAGTTFPQVVERRRWIEEAGGLPAGREFQVNRFVYLGDEEGRAAV CCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHH VREIARQLQTSAALTEGTGPVAGAAPAPERPDPAMEEKAREVLITGSASEVLEQFLALAE HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEEEECCHHHHHHHHHHHHH TGITYVIASFAFGYLDLRVSRRSRERFAAEVLPRLPVPGSAPAALPPPALPAAR HHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRVGLGYLNMAPAGDAPTARALYADFLHDARWAQAAGFAGIWVTEHHFSTYSLTSSPLLL CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHH LAQAAVVAPTLRLGTSILVLPFWDPVRLAADLLTLDALSGGRLDVGIGRGYQPHEFHGFG HHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC RDPADSRAAFTEAVDLLQQLFTGHDERFAGRFHRIDTPVTLLPRPTQRPHPPIWTSATSP CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCC ESLRFAADRGFHFMLPAGTTFPQVVERRRWIEEAGGLPAGREFQVNRFVYLGDEEGRAAV CCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHH VREIARQLQTSAALTEGTGPVAGAAPAPERPDPAMEEKAREVLITGSASEVLEQFLALAE HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEEEECCHHHHHHHHHHHHH TGITYVIASFAFGYLDLRVSRRSRERFAAEVLPRLPVPGSAPAALPPPALPAAR HHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424; 8796346 [H]