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The map label for this gene is soxC [H]

Identifier: 158315255

GI number: 158315255

Start: 4085288

End: 4085965

Strand: Direct

Name: soxC [H]

Synonym: Franean1_3455

Alternate gene names: 158315255

Gene position: 4085288-4085965 (Clockwise)

Preceding gene: 158315252

Following gene: 158315257

Centisome position: 45.48

GC content: 72.57

Gene sequence:

>678_bases
GTGCTGGCGTTCGTCGAACGCGACGCCCCCGGAGTCTCGGTGGACGATGACTGGGACGTCATGGGCCAGCGCGCCACGGT
GAGCGGCACGACGACTCTGCGGGCCGTACCGGTCGACCCTTCGCTGGTCATCCCGTACCACCGAGCCTTCGAGGTTCCTC
AGCAGCTGGGGGCCCGGGCCCAACTCGTGCACGCCGCGATCCAGGTCGGGATCGCCGGCGGCGCCCTGCGGGACGCCGGT
GAGTTCGTCCGCACCCGGGCCCGGCCGTTCTTCGAGGCCGCGCGTGGAGGCTGGGTCGATTCGGCGGCGCAGGATCCGCA
CACGATCCTGCGCTACGGCCGGCTGGCCACCCGGGTGCGGGCCGCGGAGGAGCTGCTGCGTTGGGCCGCCGACCGGTTGC
ACGAGGTCGGGCGATCCCCGCGGGACGCGCGGCAGGCCGCGGAAGGCTCGCTCGCGGTGGCCCAGGCGAAGGCGTTCGGC
AGTGAGGTCGCCGCGGAGGTGGCCAGCGATCTGTTCGCGCTGTCCGGCGCCAGCGCCACCGACGAGCGCCACGATCTGAG
TCGACACTGGCGCAACGCCCGCACCCACGCCAGCCACGACCCGGTGGACTGGAAGTACCACCATGTCGGGAACTTCCTCC
TCAACGACGTGCTGCCCCCCAACCACGGCCAGCTCTGA

Upstream 100 bases:

>100_bases
CGGCACCGGGCTGCGGCTCGACGGGACCAAGTACTACAGCACCGGGTCGATCACCGCGCGGTGGATCGGCGTCAGTGCGC
TCGACGAGGCTGACCGCCTG

Downstream 100 bases:

>100_bases
AGCGGCGACGTCCGGCAACCCCGGCCGGTCCGGAGTGCTTCAGCCAGCGGAGTACAGATGGATTGGTAGCAAGTTGTGGT
GATGGTCATCGCGTCGAGAG

Product: acyl-CoA dehydrogenase type 2

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MLAFVERDAPGVSVDDDWDVMGQRATVSGTTTLRAVPVDPSLVIPYHRAFEVPQQLGARAQLVHAAIQVGIAGGALRDAG
EFVRTRARPFFEAARGGWVDSAAQDPHTILRYGRLATRVRAAEELLRWAADRLHEVGRSPRDARQAAEGSLAVAQAKAFG
SEVAAEVASDLFALSGASATDERHDLSRHWRNARTHASHDPVDWKYHHVGNFLLNDVLPPNHGQL

Sequences:

>Translated_225_residues
MLAFVERDAPGVSVDDDWDVMGQRATVSGTTTLRAVPVDPSLVIPYHRAFEVPQQLGARAQLVHAAIQVGIAGGALRDAG
EFVRTRARPFFEAARGGWVDSAAQDPHTILRYGRLATRVRAAEELLRWAADRLHEVGRSPRDARQAAEGSLAVAQAKAFG
SEVAAEVASDLFALSGASATDERHDLSRHWRNARTHASHDPVDWKYHHVGNFLLNDVLPPNHGQL
>Mature_225_residues
MLAFVERDAPGVSVDDDWDVMGQRATVSGTTTLRAVPVDPSLVIPYHRAFEVPQQLGARAQLVHAAIQVGIAGGALRDAG
EFVRTRARPFFEAARGGWVDSAAQDPHTILRYGRLATRVRAAEELLRWAADRLHEVGRSPRDARQAAEGSLAVAQAKAFG
SEVAAEVASDLFALSGASATDERHDLSRHWRNARTHASHDPVDWKYHHVGNFLLNDVLPPNHGQL

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 24530; Mature: 24530

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFVERDAPGVSVDDDWDVMGQRATVSGTTTLRAVPVDPSLVIPYHRAFEVPQQLGARA
CCEEECCCCCCCCCCCCHHHCCCCEEECCCCEEEEECCCCCEECCHHHHHHHHHHHCHHH
QLVHAAIQVGIAGGALRDAGEFVRTRARPFFEAARGGWVDSAAQDPHTILRYGRLATRVR
HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
AAEELLRWAADRLHEVGRSPRDARQAAEGSLAVAQAKAFGSEVAAEVASDLFALSGASAT
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DERHDLSRHWRNARTHASHDPVDWKYHHVGNFLLNDVLPPNHGQL
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLAFVERDAPGVSVDDDWDVMGQRATVSGTTTLRAVPVDPSLVIPYHRAFEVPQQLGARA
CCEEECCCCCCCCCCCCHHHCCCCEEECCCCEEEEECCCCCEECCHHHHHHHHHHHCHHH
QLVHAAIQVGIAGGALRDAGEFVRTRARPFFEAARGGWVDSAAQDPHTILRYGRLATRVR
HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
AAEELLRWAADRLHEVGRSPRDARQAAEGSLAVAQAKAFGSEVAAEVASDLFALSGASAT
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DERHDLSRHWRNARTHASHDPVDWKYHHVGNFLLNDVLPPNHGQL
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]