| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315163
Identifier: 158315163
GI number: 158315163
Start: 3986995
End: 3987774
Strand: Direct
Name: 158315163
Synonym: Franean1_3363
Alternate gene names: NA
Gene position: 3986995-3987774 (Clockwise)
Preceding gene: 158315162
Following gene: 158315165
Centisome position: 44.39
GC content: 75.51
Gene sequence:
>780_bases ATGACTACTTCGCTGGGACTGGGCCTGATCGTCGGTGCGCTGCTCGGGCTGTTCGGTGGCGGCGGGTCGGTCCTGGCCGT GCCGGCCCTGGTCTACGGCGCCGGGCTGCCGTTGCGCGCGGCGGTGCCGGCGTCCCTGCTCGTTGTGGGGATCTCCTCGG CCACGGCCGCGGTGGCTCGCGTGCGGGCCGGGCAGGTGCGGTGGCGGATCGCCGCCGTCTTCGGTGTGACCGGCGCGGCC GCGGCCTTCGTCGGCGCCGCGGTGAACCGGCGGCTCGATCCGGCCATCGTGCTGATCGGCTTCGCCGCGCTCATGGTGGC CGCCGGTGCCCAGATGCTGCGGGGGCGCTCCAGGCTCGGCGGCGACTGCGCGCTGCCCGGCGGCGGGACGAACTGGCGCG GCTGCCTCCCCAAAGCGCTCGGCGCTGGCCTGGGCGTGGGGTTCCTGACCGGCCTGTTCGGGGTCGGCGGCGGCTTCCTC ATCATCCCGGCCCTGGTCCTGCTGCTGGGCCTGCCGATGCCGGCCGCGGTCGGCACCTCGCTGGTCGTGATCGTGACGAA CGCGGTGGCCGGGTTCGCCGCACACGCCGGGGACGGTGCGCTGGATGTTCCCGTCGTGGCGGCGTTCACCGGCGCGGCAG TGGTCGGTGCGCTGGGTGTCGGGCGCGTGGCCGACCGGCTGCCCGCCGACCGGTTGCGCCGCTGGTTCGCCTACCTGGTC TTCGCCGTGGCGGCCTTCGTCGTGGCGCAGGCTGTGCTGAACCCGTCGGCGGGGGGCTGA
Upstream 100 bases:
>100_bases GCTGCCCTACAACCGGGGGCCGCGGGCCGATCTGGAATCCGTCCTGACCGCGCTCGCCGGCGACCGGGCCTAAGCGGCCG GGATCGGGGCCGGGTATCCG
Downstream 100 bases:
>100_bases GCCGGCGCCGAACGCCCCGCTGCCGTCGGTGGAATGCCGTACGCCAGCGGGCCGCAGGCGCGCCCGCGGGCCGAGACCCG CGGGCGCGATGCCGGTGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Protein; Membrane Permease Protein
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MTTSLGLGLIVGALLGLFGGGGSVLAVPALVYGAGLPLRAAVPASLLVVGISSATAAVARVRAGQVRWRIAAVFGVTGAA AAFVGAAVNRRLDPAIVLIGFAALMVAAGAQMLRGRSRLGGDCALPGGGTNWRGCLPKALGAGLGVGFLTGLFGVGGGFL IIPALVLLLGLPMPAAVGTSLVVIVTNAVAGFAAHAGDGALDVPVVAAFTGAAVVGALGVGRVADRLPADRLRRWFAYLV FAVAAFVVAQAVLNPSAGG
Sequences:
>Translated_259_residues MTTSLGLGLIVGALLGLFGGGGSVLAVPALVYGAGLPLRAAVPASLLVVGISSATAAVARVRAGQVRWRIAAVFGVTGAA AAFVGAAVNRRLDPAIVLIGFAALMVAAGAQMLRGRSRLGGDCALPGGGTNWRGCLPKALGAGLGVGFLTGLFGVGGGFL IIPALVLLLGLPMPAAVGTSLVVIVTNAVAGFAAHAGDGALDVPVVAAFTGAAVVGALGVGRVADRLPADRLRRWFAYLV FAVAAFVVAQAVLNPSAGG >Mature_258_residues TTSLGLGLIVGALLGLFGGGGSVLAVPALVYGAGLPLRAAVPASLLVVGISSATAAVARVRAGQVRWRIAAVFGVTGAAA AFVGAAVNRRLDPAIVLIGFAALMVAAGAQMLRGRSRLGGDCALPGGGTNWRGCLPKALGAGLGVGFLTGLFGVGGGFLI IPALVLLLGLPMPAAVGTSLVVIVTNAVAGFAAHAGDGALDVPVVAAFTGAAVVGALGVGRVADRLPADRLRRWFAYLVF AVAAFVVAQAVLNPSAGG
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25222; Mature: 25091
Theoretical pI: Translated: 12.16; Mature: 12.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSLGLGLIVGALLGLFGGGGSVLAVPALVYGAGLPLRAAVPASLLVVGISSATAAVAR CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCHHHHHEEHHHHHHHHHH VRAGQVRWRIAAVFGVTGAAAAFVGAAVNRRLDPAIVLIGFAALMVAAGAQMLRGRSRLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GDCALPGGGTNWRGCLPKALGAGLGVGFLTGLFGVGGGFLIIPALVLLLGLPMPAAVGTS CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCH LVVIVTNAVAGFAAHAGDGALDVPVVAAFTGAAVVGALGVGRVADRLPADRLRRWFAYLV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FAVAAFVVAQAVLNPSAGG HHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TTSLGLGLIVGALLGLFGGGGSVLAVPALVYGAGLPLRAAVPASLLVVGISSATAAVAR CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCHHHHHEEHHHHHHHHHH VRAGQVRWRIAAVFGVTGAAAAFVGAAVNRRLDPAIVLIGFAALMVAAGAQMLRGRSRLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GDCALPGGGTNWRGCLPKALGAGLGVGFLTGLFGVGGGFLIIPALVLLLGLPMPAAVGTS CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCH LVVIVTNAVAGFAAHAGDGALDVPVVAAFTGAAVVGALGVGRVADRLPADRLRRWFAYLV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FAVAAFVVAQAVLNPSAGG HHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA