| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315109
Identifier: 158315109
GI number: 158315109
Start: 3919551
End: 3920810
Strand: Direct
Name: 158315109
Synonym: Franean1_3308
Alternate gene names: NA
Gene position: 3919551-3920810 (Clockwise)
Preceding gene: 158315108
Following gene: 158315116
Centisome position: 43.64
GC content: 71.11
Gene sequence:
>1260_bases GTGACCGGCGTCCCCGGTGCTACCGGCGCGACCGTTCTGCGCGCGGCACGCTGGGTCGACGTCGACGCGGGGACGGTGCG CTCGCCCGCGGTCGTGGTGGTCGAGGGGAACCGCATCACCGCGGTGAACCCGGCCGTGCCGCCCACCGGCGCGACCGAGA TCGATCTGGGTGCTCTCACTCTGCTGCCGGGCCTGATGGACATGGAGATCAATCTCCTCCTCGGTGGCCCCGAGAACCCG ACGGGCCTGCCGAACCCGCTGCACGGCGTCCAGGACGACCCGGTGTACCGGACCCTGCGGGCGACGGTGAACGCCCGCAC CACGCTGCTGGCCGGTTTCACGACGGTGCGCAACCTCGGGCTGATGGTCAAGACCGGGGGGTATCTGCTGGACGTGGACC TGGCCCGGGCGATCGAAGCGGGCTGGGTACCGGGGCCCCGGATCGTGGCCGCCGGTCACGCGATCACGCCCACCGGCGGG CACCTCGACCCGACGATGTTCCAGCGGCTCGCGCCGCACATCATGCCGCTGGGCGTCGAGGAGGGGATCGCCAACGGCGT CCCGCAGGTGCGCGCGGCGGTCCGCTACCAGATCAAGTACGGCGCCGGGGTCATCAAGATCTCGGCGTCGGGCGGGGTGA TGTCGCACAGCACCGCCGCCGGCGCGCAGCAGTACTCCGACGAGGAGATCGCGGCCATCGTCGACGAGGCCCACCGGGCG GGGCTCAAGGTGGCTGCCCACGCCCACGGCGACGCGGGCATCCGGGCCTGTGTCCGGGCCGGGGTGGACTGCATCGAGCA CGGCTCACTGGCCAGCGACGACACCATCCGGATGATGGTCGACCATGGGACTTTCCTCGTCCCTACCAGCTATCTGTCGG AAGGCCTCGACATCTCGAAGGCGGCGCCCGCGCTCCAGGCGAAGGCCGCGGAGGTCTTCCCCCGGGCTCGGCGGACGCTG GGTAGGGCCATCGAGGCCGGGGTGCGGATCGCGTGTGGCACCGACGCGCCCGCCATCCCGCACGGGCACAACGCGAAGGA GCTGTGGGCTCTGGTCGACCGCGGCATGACCGCGATGCAGGCGCTGCGGGCCGCCACGGTCACCAGCGCCGAGCTGATCG GTGTCGATGACCGCGGTCGCCTGGCGGCTGGTCTGCTGGCCGACATCATCGCGGTTCCCGGAGATCCATCCGATGACATC ACGGCCACGCAGGACGTGCGGTTCGTGATGAAGGACGGCCTCGTCTACAAGAACGAGTAG
Upstream 100 bases:
>100_bases ATTCGATGATCAGCGTGTCCTTCGCGGTCGAGGCGTGGAAGCAGCCGCGGATTCCCGATTCCGGCGCCGCCGCGGTCGAC TGTGTCATCGAGCCGGTCCC
Downstream 100 bases:
>100_bases CACGGGCGTGGCGCTGGACCAGACCAGACCAGACGACCGGACCGCGGCCGGCTGGTCTGGTCCAGCGACACCTGGCTCAC ATCCGGGGGCAGAGCGTCGC
Product: amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MTGVPGATGATVLRAARWVDVDAGTVRSPAVVVVEGNRITAVNPAVPPTGATEIDLGALTLLPGLMDMEINLLLGGPENP TGLPNPLHGVQDDPVYRTLRATVNARTTLLAGFTTVRNLGLMVKTGGYLLDVDLARAIEAGWVPGPRIVAAGHAITPTGG HLDPTMFQRLAPHIMPLGVEEGIANGVPQVRAAVRYQIKYGAGVIKISASGGVMSHSTAAGAQQYSDEEIAAIVDEAHRA GLKVAAHAHGDAGIRACVRAGVDCIEHGSLASDDTIRMMVDHGTFLVPTSYLSEGLDISKAAPALQAKAAEVFPRARRTL GRAIEAGVRIACGTDAPAIPHGHNAKELWALVDRGMTAMQALRAATVTSAELIGVDDRGRLAAGLLADIIAVPGDPSDDI TATQDVRFVMKDGLVYKNE
Sequences:
>Translated_419_residues MTGVPGATGATVLRAARWVDVDAGTVRSPAVVVVEGNRITAVNPAVPPTGATEIDLGALTLLPGLMDMEINLLLGGPENP TGLPNPLHGVQDDPVYRTLRATVNARTTLLAGFTTVRNLGLMVKTGGYLLDVDLARAIEAGWVPGPRIVAAGHAITPTGG HLDPTMFQRLAPHIMPLGVEEGIANGVPQVRAAVRYQIKYGAGVIKISASGGVMSHSTAAGAQQYSDEEIAAIVDEAHRA GLKVAAHAHGDAGIRACVRAGVDCIEHGSLASDDTIRMMVDHGTFLVPTSYLSEGLDISKAAPALQAKAAEVFPRARRTL GRAIEAGVRIACGTDAPAIPHGHNAKELWALVDRGMTAMQALRAATVTSAELIGVDDRGRLAAGLLADIIAVPGDPSDDI TATQDVRFVMKDGLVYKNE >Mature_418_residues TGVPGATGATVLRAARWVDVDAGTVRSPAVVVVEGNRITAVNPAVPPTGATEIDLGALTLLPGLMDMEINLLLGGPENPT GLPNPLHGVQDDPVYRTLRATVNARTTLLAGFTTVRNLGLMVKTGGYLLDVDLARAIEAGWVPGPRIVAAGHAITPTGGH LDPTMFQRLAPHIMPLGVEEGIANGVPQVRAAVRYQIKYGAGVIKISASGGVMSHSTAAGAQQYSDEEIAAIVDEAHRAG LKVAAHAHGDAGIRACVRAGVDCIEHGSLASDDTIRMMVDHGTFLVPTSYLSEGLDISKAAPALQAKAAEVFPRARRTLG RAIEAGVRIACGTDAPAIPHGHNAKELWALVDRGMTAMQALRAATVTSAELIGVDDRGRLAAGLLADIIAVPGDPSDDIT ATQDVRFVMKDGLVYKNE
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.coelicolor SCO1861 [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322248, Length=334, Percent_Identity=33.5329341317365, Blast_Score=161, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: NA
Molecular weight: Translated: 43515; Mature: 43384
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGVPGATGATVLRAARWVDVDAGTVRSPAVVVVEGNRITAVNPAVPPTGATEIDLGALT CCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEECCHHHH LLPGLMDMEINLLLGGPENPTGLPNPLHGVQDDPVYRTLRATVNARTTLLAGFTTVRNLG HCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC LMVKTGGYLLDVDLARAIEAGWVPGPRIVAAGHAITPTGGHLDPTMFQRLAPHIMPLGVE EEEECCCEEEEHHHHHHHHHCCCCCCEEEECCCEECCCCCCCCHHHHHHHCHHHCCCCHH EGIANGVPQVRAAVRYQIKYGAGVIKISASGGVMSHSTAAGAQQYSDEEIAAIVDEAHRA HHHHCCCHHHHHHEEEEEEECCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHC GLKVAAHAHGDAGIRACVRAGVDCIEHGSLASDDTIRMMVDHGTFLVPTSYLSEGLDISK CEEEEEECCCCHHHHHHHHHCCHHHHCCCCCCCCEEEEEEECCCEEEEHHHHHCCCCCHH AAPALQAKAAEVFPRARRTLGRAIEAGVRIACGTDAPAIPHGHNAKELWALVDRGMTAMQ CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHH ALRAATVTSAELIGVDDRGRLAAGLLADIIAVPGDPSDDITATQDVRFVMKDGLVYKNE HHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEECCC >Mature Secondary Structure TGVPGATGATVLRAARWVDVDAGTVRSPAVVVVEGNRITAVNPAVPPTGATEIDLGALT CCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEECCHHHH LLPGLMDMEINLLLGGPENPTGLPNPLHGVQDDPVYRTLRATVNARTTLLAGFTTVRNLG HCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC LMVKTGGYLLDVDLARAIEAGWVPGPRIVAAGHAITPTGGHLDPTMFQRLAPHIMPLGVE EEEECCCEEEEHHHHHHHHHCCCCCCEEEECCCEECCCCCCCCHHHHHHHCHHHCCCCHH EGIANGVPQVRAAVRYQIKYGAGVIKISASGGVMSHSTAAGAQQYSDEEIAAIVDEAHRA HHHHCCCHHHHHHEEEEEEECCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHC GLKVAAHAHGDAGIRACVRAGVDCIEHGSLASDDTIRMMVDHGTFLVPTSYLSEGLDISK CEEEEEECCCCHHHHHHHHHCCHHHHCCCCCCCCEEEEEEECCCEEEEHHHHHCCCCCHH AAPALQAKAAEVFPRARRTLGRAIEAGVRIACGTDAPAIPHGHNAKELWALVDRGMTAMQ CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHH ALRAATVTSAELIGVDDRGRLAAGLLADIIAVPGDPSDDITATQDVRFVMKDGLVYKNE HHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]