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The map label for this gene is yxjL [H]

Identifier: 158314991

GI number: 158314991

Start: 3752140

End: 3752811

Strand: Direct

Name: yxjL [H]

Synonym: Franean1_3185

Alternate gene names: 158314991

Gene position: 3752140-3752811 (Clockwise)

Preceding gene: 158314990

Following gene: 158314992

Centisome position: 41.77

GC content: 66.96

Gene sequence:

>672_bases
ATGATCCGCGTCCTCCTGGCCGATGACCAGGCCCTGCTGCGCATGGGTCTGCGCATCGTCATTGACACCGAAGACGACCT
CACCGTCATCGGGGAGGCCAGCGACGGAGCGGAGGCCGTCCGCGCGGTCGCCGAGCTACAACCCGACGTCGTCCTCATGG
ATGTCCGCATGCCCGGGGTCGACGGCATCACCGCCACCGCGCAGATCACCGCCCGGCACCCGGCCAGCAGGGTGCTGATC
CTGACCACCTTCGACGTCGATCAGTACGTCTTCGACGGTCTGCGCGCCGGTGCCAGCGGCTTCCTGCTCAAGGACGCCGC
CCCGGGGGAGCTCGTCAACGCCATCCGCACCGTCGCCCGGGGCGATGCCGTACTCGGGCCCACCGCGGCACGGCGTCTCG
TCGATCGTTTCGCCGCGCTGCCAGCCGACAGCGGATCAGACCGCGCGGCCCGTCCCGAGATCGTCCACGATCTCACCGAA
CGGGAGCGTGAGGTGTTCCTGCTTGTCGCCCGCGGGTACTCGAACCGCGAGATCGCCGGCAGACTCCACCTCTCCGAACA
CACTGTAAAGGTCCACGTCGGCCGAATTCTGGCCAAACTCGACCTACGCGACCGCATCCAAGCCGTGGTTCTCGCCTACG
AATCCGGGCTGGTTATTCCAGAAATCGATTGA

Upstream 100 bases:

>100_bases
GGGAACTCGACTCCGGACCCCGCGAACCCACCGGCTGGCAGCTCGAAGCCCGGCTGCCACTGCGCGACGACGCGGTGGCC
GTCCCCGATCGACCGCGGCG

Downstream 100 bases:

>100_bases
CATGGGAGAAGCACTCCACCTCGATACCACGAGCGAGTAATCTGTGATGCGCCAATAACCGCACCCTCGCGCGAAGGTCA
GCTTACTCTCAAGGCGATAA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MIRVLLADDQALLRMGLRIVIDTEDDLTVIGEASDGAEAVRAVAELQPDVVLMDVRMPGVDGITATAQITARHPASRVLI
LTTFDVDQYVFDGLRAGASGFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRFAALPADSGSDRAARPEIVHDLTE
REREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAYESGLVIPEID

Sequences:

>Translated_223_residues
MIRVLLADDQALLRMGLRIVIDTEDDLTVIGEASDGAEAVRAVAELQPDVVLMDVRMPGVDGITATAQITARHPASRVLI
LTTFDVDQYVFDGLRAGASGFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRFAALPADSGSDRAARPEIVHDLTE
REREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAYESGLVIPEID
>Mature_223_residues
MIRVLLADDQALLRMGLRIVIDTEDDLTVIGEASDGAEAVRAVAELQPDVVLMDVRMPGVDGITATAQITARHPASRVLI
LTTFDVDQYVFDGLRAGASGFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRFAALPADSGSDRAARPEIVHDLTE
REREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAYESGLVIPEID

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=210, Percent_Identity=35.2380952380952, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1788222, Length=222, Percent_Identity=33.7837837837838, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787473, Length=211, Percent_Identity=34.5971563981043, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1790102, Length=207, Percent_Identity=32.3671497584541, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1788712, Length=202, Percent_Identity=25.2475247524752, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1786747, Length=206, Percent_Identity=23.3009708737864, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082052, Length=104, Percent_Identity=33.6538461538462, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788546, Length=225, Percent_Identity=26.2222222222222, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24144; Mature: 24144

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVLLADDQALLRMGLRIVIDTEDDLTVIGEASDGAEAVRAVAELQPDVVLMDVRMPGV
CEEEEEECCHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
DGITATAQITARHPASRVLILTTFDVDQYVFDGLRAGASGFLLKDAAPGELVNAIRTVAR
CCCEEEEEEEECCCCCEEEEEEEECHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC
GDAVLGPTAARRLVDRFAALPADSGSDRAARPEIVHDLTEREREVFLLVARGYSNREIAG
CCCEECHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCEEEE
RLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAYESGLVIPEID
EEEECCCEEEEEHHHHHHHHCHHHHHHEEEEEECCCEEEECCC
>Mature Secondary Structure
MIRVLLADDQALLRMGLRIVIDTEDDLTVIGEASDGAEAVRAVAELQPDVVLMDVRMPGV
CEEEEEECCHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
DGITATAQITARHPASRVLILTTFDVDQYVFDGLRAGASGFLLKDAAPGELVNAIRTVAR
CCCEEEEEEEECCCCCEEEEEEEECHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC
GDAVLGPTAARRLVDRFAALPADSGSDRAARPEIVHDLTEREREVFLLVARGYSNREIAG
CCCEECHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCEEEE
RLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAYESGLVIPEID
EEEECCCEEEEEHHHHHHHHCHHHHHHEEEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]