| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314989
Identifier: 158314989
GI number: 158314989
Start: 3750062
End: 3750892
Strand: Direct
Name: 158314989
Synonym: Franean1_3183
Alternate gene names: NA
Gene position: 3750062-3750892 (Clockwise)
Preceding gene: 158314988
Following gene: 158314990
Centisome position: 41.75
GC content: 67.51
Gene sequence:
>831_bases ATGATCGCCACGCTCGGGTCCGGCGTCGTGACCGCTTCACCGCGGCTGGCCGTCACCCAGGCCCGGGTCCTGCGCTCGGA ATGGACGAAATTCCGGTCCTTGCGTTCGCCGGCTTGGACCCTGCTGATCGCGGTAGCTCTCACGATCGGTATTGGTGCTC TGATCAGTGCGGTCCAGGCCAACCACTACTCGTCTCTCGATCCGGTCGAGAAGCGCACCTTCGATCCGATTTCCATCAGT CTGGCCGGTGTCACTTTCGCCGAGCTCGCTGTCGGCGTCCTCGGGGTTCTGCTGATCACCGGCGAGTACACCACCGGCAT GATCCGGTCGTCGCTGACCGTCGTACCCGGGCGCCTGCCTGTGCTGTGGGCCAAGATCGGTGTGTGCGCGACGGTCATGT TCGTCGTGATGCTGGCCGCGGCGACCGTCGCCTTTTTCAGCGGCCAGGCCGTTCTCGATCAGAAGGGCCTCGGCGTCGGC ATCACGGATGCGGGAGCCCTGCGCTCGGTCGTCGGTTCGGCGCTCGCCGTCACCGCGATCGGCGTCATCGGGCTGGCGCT CGGTGCGCTGCTGCGCAACACCGCCGCTGGTATCTCCACCTTCGTCGCGGCGTTCTTCGTCGTTCCGCCGCTGACGAACC TGTTGCCCGATTCGTGGTCGTCGACCATCAACCCTTATCTCCCCGACCGGGCGGCCAGTGCCGTGTTCGGTGGCGGCCCT CCGGACATGGGCGACATGCTCGGCCCGTGGAGCGGCTTCGCCGTGCTGTGCCTGTACGCCGCTGTCCTGGTCGGCGTCGC CGCCTGGCAGCTCCGCGGGCGGGACGCGTGA
Upstream 100 bases:
>100_bases CGTCACACAGTGCGTCGCTGGAGGAGGCATTCCTGCAGTTGACGGCCGAGGCCGTCGAGTACCGGGCCGCGGGCGACGAG ACCGTGCGGGGGGCCGCGGC
Downstream 100 bases:
>100_bases CCGGCGCGGGCTGATGAATCGCGTACGCCCTGGCCCGCGCGGACAATCGCGGCCATGAGGCTGGTCGGAGCAGTCGAGGA CCCACGCTCGAGAACCGCTC
Product: putative ABC transporter transmembrane protein
Products: NA
Alternate protein names: ABC Transporter Integral Membrane Subunit; Integral Membrane Protein; ABC Transporter Integral Membrane Protein; ABC Transporter Permease Protein; ABC Transport System Permease Protein; ABC-2 Type Transporter
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MIATLGSGVVTASPRLAVTQARVLRSEWTKFRSLRSPAWTLLIAVALTIGIGALISAVQANHYSSLDPVEKRTFDPISIS LAGVTFAELAVGVLGVLLITGEYTTGMIRSSLTVVPGRLPVLWAKIGVCATVMFVVMLAAATVAFFSGQAVLDQKGLGVG ITDAGALRSVVGSALAVTAIGVIGLALGALLRNTAAGISTFVAAFFVVPPLTNLLPDSWSSTINPYLPDRAASAVFGGGP PDMGDMLGPWSGFAVLCLYAAVLVGVAAWQLRGRDA
Sequences:
>Translated_276_residues MIATLGSGVVTASPRLAVTQARVLRSEWTKFRSLRSPAWTLLIAVALTIGIGALISAVQANHYSSLDPVEKRTFDPISIS LAGVTFAELAVGVLGVLLITGEYTTGMIRSSLTVVPGRLPVLWAKIGVCATVMFVVMLAAATVAFFSGQAVLDQKGLGVG ITDAGALRSVVGSALAVTAIGVIGLALGALLRNTAAGISTFVAAFFVVPPLTNLLPDSWSSTINPYLPDRAASAVFGGGP PDMGDMLGPWSGFAVLCLYAAVLVGVAAWQLRGRDA >Mature_276_residues MIATLGSGVVTASPRLAVTQARVLRSEWTKFRSLRSPAWTLLIAVALTIGIGALISAVQANHYSSLDPVEKRTFDPISIS LAGVTFAELAVGVLGVLLITGEYTTGMIRSSLTVVPGRLPVLWAKIGVCATVMFVVMLAAATVAFFSGQAVLDQKGLGVG ITDAGALRSVVGSALAVTAIGVIGLALGALLRNTAAGISTFVAAFFVVPPLTNLLPDSWSSTINPYLPDRAASAVFGGGP PDMGDMLGPWSGFAVLCLYAAVLVGVAAWQLRGRDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28368; Mature: 28368
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIATLGSGVVTASPRLAVTQARVLRSEWTKFRSLRSPAWTLLIAVALTIGIGALISAVQA CCEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH NHYSSLDPVEKRTFDPISISLAGVTFAELAVGVLGVLLITGEYTTGMIRSSLTVVPGRLP CCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH VLWAKIGVCATVMFVVMLAAATVAFFSGQAVLDQKGLGVGITDAGALRSVVGSALAVTAI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH GVIGLALGALLRNTAAGISTFVAAFFVVPPLTNLLPDSWSSTINPYLPDRAASAVFGGGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHCCCCCC PDMGDMLGPWSGFAVLCLYAAVLVGVAAWQLRGRDA CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIATLGSGVVTASPRLAVTQARVLRSEWTKFRSLRSPAWTLLIAVALTIGIGALISAVQA CCEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH NHYSSLDPVEKRTFDPISISLAGVTFAELAVGVLGVLLITGEYTTGMIRSSLTVVPGRLP CCCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH VLWAKIGVCATVMFVVMLAAATVAFFSGQAVLDQKGLGVGITDAGALRSVVGSALAVTAI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH GVIGLALGALLRNTAAGISTFVAAFFVVPPLTNLLPDSWSSTINPYLPDRAASAVFGGGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHCCCCCC PDMGDMLGPWSGFAVLCLYAAVLVGVAAWQLRGRDA CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA