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The map label for this gene is ycgG [C]

Identifier: 158314922

GI number: 158314922

Start: 3668379

End: 3669113

Strand: Direct

Name: ycgG [C]

Synonym: Franean1_3112

Alternate gene names: 158314922

Gene position: 3668379-3669113 (Clockwise)

Preceding gene: 158314921

Following gene: 158314923

Centisome position: 40.84

GC content: 69.66

Gene sequence:

>735_bases
GTGGACCTGCGCCTCGGGGTGGTCGCAGGCTACGAGGCCCTGGCCCGGTTCGGAGCATGCCTGGCGGACGCGCCGTACCT
CGTGTTCGCGGAGGCGAACCGCCGCGGCTGCGCCGCCGAACTGGAGGCACGGGTGCTGCGCGCGGCGCTCGCCGCCCGGG
ACCGTCTTCCCGCGCGTTGTTTTCTCGCCGTCAACGTGTCTCCCCATCTGCTCGCCTCTCTCGAGGTCAGCGCGGTCTGG
CGGGACGCGGATCCGTCCCGCCTGGTACTCGAGCTGAACGACGCGGTCGCCTTCGACGGTGAAGCCGCCCTGAGCGCAAC
GTTGGAGGCGTTGCGCAAAGCCGGCGCGTTCATCGCCATGGACGATGTCGGTTCGGGCTATGCGGGTCTGCGGCAGCTCA
CCCGCACCCGCCCTGATTGTGTGAAGCTGGACCGCTCACCGGTCACCCACATCGACGACGATCCGGTGAAGATCGTGCTC
ACCGAGCTCGTCCGCGGAATCGCCAGCAGAGTCAACGGATGGGTGATCGCCGAGGGGGTCGAACGGCTCGATGAGCTCAC
CGCGCTCGTCGCCATGGGCATGCCGCTTGGGCAGGGCTATCTGCTCGGCCGGCCCGCGCGGCAGTGGCAGTGGCAGGAAC
TCGACCCCGCGGTGGCCGCGCGCATCCGGCAGCTCGCGAACGCAGGGACCGGTCGGCGCACATCATCAGCCTCAGGTAGT
CGGTCCGCATCGTGA

Upstream 100 bases:

>100_bases
CGAGCGTGACAGCAGCCAGGGCGTCGACGCTGGTGAGGGGCCTGACCTGGATCGCATCCTCGCCGACCCGTCAGCGCCGA
CTCTCGTCTTCCAGCCGATC

Downstream 100 bases:

>100_bases
CCAGCCGGGCGGCGCTCGACGCACTCGGTGAGACGCTCCGACGAGTCGATCACCTTGGTCAGCAGCGCGGATCTGATCGA
CGTCCGGGCTGATCGACAAG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDLRLGVVAGYEALARFGACLADAPYLVFAEANRRGCAAELEARVLRAALAARDRLPARCFLAVNVSPHLLASLEVSAVW
RDADPSRLVLELNDAVAFDGEAALSATLEALRKAGAFIAMDDVGSGYAGLRQLTRTRPDCVKLDRSPVTHIDDDPVKIVL
TELVRGIASRVNGWVIAEGVERLDELTALVAMGMPLGQGYLLGRPARQWQWQELDPAVAARIRQLANAGTGRRTSSASGS
RSAS

Sequences:

>Translated_244_residues
MDLRLGVVAGYEALARFGACLADAPYLVFAEANRRGCAAELEARVLRAALAARDRLPARCFLAVNVSPHLLASLEVSAVW
RDADPSRLVLELNDAVAFDGEAALSATLEALRKAGAFIAMDDVGSGYAGLRQLTRTRPDCVKLDRSPVTHIDDDPVKIVL
TELVRGIASRVNGWVIAEGVERLDELTALVAMGMPLGQGYLLGRPARQWQWQELDPAVAARIRQLANAGTGRRTSSASGS
RSAS
>Mature_244_residues
MDLRLGVVAGYEALARFGACLADAPYLVFAEANRRGCAAELEARVLRAALAARDRLPARCFLAVNVSPHLLASLEVSAVW
RDADPSRLVLELNDAVAFDGEAALSATLEALRKAGAFIAMDDVGSGYAGLRQLTRTRPDCVKLDRSPVTHIDDDPVKIVL
TELVRGIASRVNGWVIAEGVERLDELTALVAMGMPLGQGYLLGRPARQWQWQELDPAVAARIRQLANAGTGRRTSSASGS
RSAS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=217, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI226510982, Length=154, Percent_Identity=35.0649350649351, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=116, Percent_Identity=32.7586206896552, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082096, Length=122, Percent_Identity=31.9672131147541, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788849, Length=166, Percent_Identity=28.9156626506024, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87081980, Length=190, Percent_Identity=25.7894736842105, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 26118; Mature: 26118

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRLGVVAGYEALARFGACLADAPYLVFAEANRRGCAAELEARVLRAALAARDRLPARC
CCCEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
FLAVNVSPHLLASLEVSAVWRDADPSRLVLELNDAVAFDGEAALSATLEALRKAGAFIAM
EEEECCCHHHHHHHHHEEEECCCCCCEEEEEECCCEEECCHHHHHHHHHHHHHCCCEEEE
DDVGSGYAGLRQLTRTRPDCVKLDRSPVTHIDDDPVKIVLTELVRGIASRVNGWVIAEGV
CCCCCCHHHHHHHHHCCCHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHH
ERLDELTALVAMGMPLGQGYLLGRPARQWQWQELDPAVAARIRQLANAGTGRRTSSASGS
HHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
RSAS
CCCC
>Mature Secondary Structure
MDLRLGVVAGYEALARFGACLADAPYLVFAEANRRGCAAELEARVLRAALAARDRLPARC
CCCEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
FLAVNVSPHLLASLEVSAVWRDADPSRLVLELNDAVAFDGEAALSATLEALRKAGAFIAM
EEEECCCHHHHHHHHHEEEECCCCCCEEEEEECCCEEECCHHHHHHHHHHHHHCCCEEEE
DDVGSGYAGLRQLTRTRPDCVKLDRSPVTHIDDDPVKIVLTELVRGIASRVNGWVIAEGV
CCCCCCHHHHHHHHHCCCHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHH
ERLDELTALVAMGMPLGQGYLLGRPARQWQWQELDPAVAARIRQLANAGTGRRTSSASGS
HHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
RSAS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]