| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314855
Identifier: 158314855
GI number: 158314855
Start: 3578882
End: 3579868
Strand: Direct
Name: 158314855
Synonym: Franean1_3045
Alternate gene names: NA
Gene position: 3578882-3579868 (Clockwise)
Preceding gene: 158314854
Following gene: 158314856
Centisome position: 39.84
GC content: 63.83
Gene sequence:
>987_bases ATGACATTTACCAGACCACGGCGCCGCAGTGCGGCCCTGGTCGCCGCGTTGCTGGGCACCGTGATCCTCCTTGCGGGGTG CGGCAGCGACGACAGCGACGATCAAGGTGGCGCGGTCGGAGCGACCCGCACTGTGGAGGCCGACAACGGCGCGGTCGAGA TTCCGGCGCACCCGCAGCGGATTGCAACGCTCGGGAGACTAACCGTGTCGTTCCTCGACCTCGGCGGCGAGCCAGTGGGC GTCACGGAGGTGGACGCTTCCGTGCTCGACGTACTGCCCGAGGAGCAGCAGGCCGCGTACAAGGCGGCCAAGCTCCTCGG CTCCGGCGCCAGCGAAGCCGACCTCGAGCTGCTGGCCACCCTCAAGCCCGACCTCATCTTGTTCTCCGCACCTGACTCCG ACTTCGAGCAGATGAAGTCGCAACTGGAATCGATCGCACCGACGATCTTCTTCGGATTCAGCTCGGACTGGAAGACCCGC CTGTCCGTGACCGCGGATGCCACTGAGTTGACAGATGCTCTCAACGAGCAGAAGACCGAGTATGAGGAGAAGCTCGCCGA GTTCCAGAACAAGTACCCGGAGATCATAAAGACCACCAAGTTCGGCGAAGTCAACAGAGGTTCTTGGCAGGACGCAGGAA TGTTCACCCTCAACGGCTCGCAGTGCTCGGAGATAGCGCGAGCGGACATTCCCCTCGACATACCCGATCTGGGCGAAGGG GGCGAGGAGCGATCGTTCGAGCAGATCGGCGGCCTGTCCGAGTACGACGTGCTCCTGTACCCCGTGGACGCTGAGGGTAA GGTCACGGAAGGCTTCGCCCCCGTGGCGGAATCGGGCGCATGGAAGGCCCTTCCCGCCGTGACCTCGGGCAAGGCCCTGG GTGTCTACTGCTTCGGCGATGTCAGCTTCACCAGATCCTATCGGACCTACTCTCAATACCTGGATTCGCTCGGCCAGGCG CTGGCGAAGCTCGCGACGGCGGGATGA
Upstream 100 bases:
>100_bases GGTCCACGCCGACGATGGAAAAGGGATCAATAGTAGCTGTCCGGATCTAACGGGGAACATCACCCCCACTCGAACGAAGA ACAGAAGGAAAAACGCATCC
Downstream 100 bases:
>100_bases CGGCACAGACCCGTGACGTCGAGGTCCGGGTGCCCGCGGCGGCATCCGGACCTCGACTGCGCGCCGTCGGTCTGCTCACA GCACTGGTGACACTGCTCGT
Product: periplasmic binding protein
Products: NA
Alternate protein names: Fe3+-Hydroxamate ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MTFTRPRRRSAALVAALLGTVILLAGCGSDDSDDQGGAVGATRTVEADNGAVEIPAHPQRIATLGRLTVSFLDLGGEPVG VTEVDASVLDVLPEEQQAAYKAAKLLGSGASEADLELLATLKPDLILFSAPDSDFEQMKSQLESIAPTIFFGFSSDWKTR LSVTADATELTDALNEQKTEYEEKLAEFQNKYPEIIKTTKFGEVNRGSWQDAGMFTLNGSQCSEIARADIPLDIPDLGEG GEERSFEQIGGLSEYDVLLYPVDAEGKVTEGFAPVAESGAWKALPAVTSGKALGVYCFGDVSFTRSYRTYSQYLDSLGQA LAKLATAG
Sequences:
>Translated_328_residues MTFTRPRRRSAALVAALLGTVILLAGCGSDDSDDQGGAVGATRTVEADNGAVEIPAHPQRIATLGRLTVSFLDLGGEPVG VTEVDASVLDVLPEEQQAAYKAAKLLGSGASEADLELLATLKPDLILFSAPDSDFEQMKSQLESIAPTIFFGFSSDWKTR LSVTADATELTDALNEQKTEYEEKLAEFQNKYPEIIKTTKFGEVNRGSWQDAGMFTLNGSQCSEIARADIPLDIPDLGEG GEERSFEQIGGLSEYDVLLYPVDAEGKVTEGFAPVAESGAWKALPAVTSGKALGVYCFGDVSFTRSYRTYSQYLDSLGQA LAKLATAG >Mature_327_residues TFTRPRRRSAALVAALLGTVILLAGCGSDDSDDQGGAVGATRTVEADNGAVEIPAHPQRIATLGRLTVSFLDLGGEPVGV TEVDASVLDVLPEEQQAAYKAAKLLGSGASEADLELLATLKPDLILFSAPDSDFEQMKSQLESIAPTIFFGFSSDWKTRL SVTADATELTDALNEQKTEYEEKLAEFQNKYPEIIKTTKFGEVNRGSWQDAGMFTLNGSQCSEIARADIPLDIPDLGEGG EERSFEQIGGLSEYDVLLYPVDAEGKVTEGFAPVAESGAWKALPAVTSGKALGVYCFGDVSFTRSYRTYSQYLDSLGQAL AKLATAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34957; Mature: 34826
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFTRPRRRSAALVAALLGTVILLAGCGSDDSDDQGGAVGATRTVEADNGAVEIPAHPQR CCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEECCCCEEECCCCHHH IATLGRLTVSFLDLGGEPVGVTEVDASVLDVLPEEQQAAYKAAKLLGSGASEADLELLAT HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH LKPDLILFSAPDSDFEQMKSQLESIAPTIFFGFSSDWKTRLSVTADATELTDALNEQKTE CCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHH YEEKLAEFQNKYPEIIKTTKFGEVNRGSWQDAGMFTLNGSQCSEIARADIPLDIPDLGEG HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC GEERSFEQIGGLSEYDVLLYPVDAEGKVTEGFAPVAESGAWKALPAVTSGKALGVYCFGD CCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHCCCCCEECCCCCCCCEEEEEEECC VSFTRSYRTYSQYLDSLGQALAKLATAG CHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TFTRPRRRSAALVAALLGTVILLAGCGSDDSDDQGGAVGATRTVEADNGAVEIPAHPQR CCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEECCCCEEECCCCHHH IATLGRLTVSFLDLGGEPVGVTEVDASVLDVLPEEQQAAYKAAKLLGSGASEADLELLAT HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH LKPDLILFSAPDSDFEQMKSQLESIAPTIFFGFSSDWKTRLSVTADATELTDALNEQKTE CCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHH YEEKLAEFQNKYPEIIKTTKFGEVNRGSWQDAGMFTLNGSQCSEIARADIPLDIPDLGEG HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC GEERSFEQIGGLSEYDVLLYPVDAEGKVTEGFAPVAESGAWKALPAVTSGKALGVYCFGD CCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHCCCCCEECCCCCCCCEEEEEEECC VSFTRSYRTYSQYLDSLGQALAKLATAG CHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA