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The map label for this gene is ykfC [H]

Identifier: 158314840

GI number: 158314840

Start: 3562262

End: 3562999

Strand: Direct

Name: ykfC [H]

Synonym: Franean1_3029

Alternate gene names: 158314840

Gene position: 3562262-3562999 (Clockwise)

Preceding gene: 158314839

Following gene: 158314841

Centisome position: 39.66

GC content: 64.77

Gene sequence:

>738_bases
GTGACGTGTCGGGTAGGGAGTCGGAGGCGGCCATATTACCGCTTGAGCCGGTCGGACAACATAACCGCCGGTGACGGGAA
GGGCCGCTGCTTCGTCGGCGCGTGTGTATGTGAGGAAGAGCTGGTGAGTGCCCTCGTGGCTAGTTCCGCCGAGCAAGACA
AGGTTCAAGCCTTGCAGCAAACGCTTTACCGGGCGGCCAAGGCTGATCCCGGGCGGCGGTTCCACGCGCTCTATGACAAG
GTCTATCGCGGTGACCTGCTGGAGCGTGCGTGGGTCCAGGTGCGCCGTAACAACGGTGCGGCTGGAGTTGACCGTGTCAC
GGTCGCTGATGTCGAGGTGTACGGGGTTCGCCGTTTCATCGACGAACTGGCTGCGGATCTGAAGGAGGGTCGGTGGCGGC
CGGCGCCCACGCGCCGGGTGTTGATCCCGAAGCCCGGATCTTCGTCCGGGCAGAGGCCGTTGTCGATTCCCACAGTCCGT
GACCGGGTCGTGCAGACGGCTGTGAAGATGGTTCTCGAGTCGGTGTTCGAGGCGGACTTCCTGCCGTGCTCGGTTGGGTT
TCGGCCCGGGCTGGCGGTGCACGACGCTCTGCAGGTGCTCGTGGATGAGTGCTGGCGGGGCAGGCGGTGGGTGGTGGAGA
CGGACATCGCCGACTGTTTCTCGGCGATCCCGCATGATCGGTTGATGAAGGCGGTCGAGGAGCGGGTCAGTGACCGGCAC
GTTCTGACGTGGGTGTAG

Upstream 100 bases:

>100_bases
AGTGACGGCGGGAACTGGAGAGACCCTGCCTGGCCCGGCAGCACTGCGGAATATCTGCCGGAGGAGGCGACGCCCTATAA
CCGATGACCCCGGGAAGTGG

Downstream 100 bases:

>100_bases
TTCCGGCCGAGTGAGATCATTGCGATAGCGATCATCGAGTGCTGTGCCAGGGTTGATCAAGAAGGTGGCTCCTTCTCGCT
ACGTTCCGTGGTGACGAAAC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTCRVGSRRRPYYRLSRSDNITAGDGKGRCFVGACVCEEELVSALVASSAEQDKVQALQQTLYRAAKADPGRRFHALYDK
VYRGDLLERAWVQVRRNNGAAGVDRVTVADVEVYGVRRFIDELAADLKEGRWRPAPTRRVLIPKPGSSSGQRPLSIPTVR
DRVVQTAVKMVLESVFEADFLPCSVGFRPGLAVHDALQVLVDECWRGRRWVVETDIADCFSAIPHDRLMKAVEERVSDRH
VLTWV

Sequences:

>Translated_245_residues
MTCRVGSRRRPYYRLSRSDNITAGDGKGRCFVGACVCEEELVSALVASSAEQDKVQALQQTLYRAAKADPGRRFHALYDK
VYRGDLLERAWVQVRRNNGAAGVDRVTVADVEVYGVRRFIDELAADLKEGRWRPAPTRRVLIPKPGSSSGQRPLSIPTVR
DRVVQTAVKMVLESVFEADFLPCSVGFRPGLAVHDALQVLVDECWRGRRWVVETDIADCFSAIPHDRLMKAVEERVSDRH
VLTWV
>Mature_244_residues
TCRVGSRRRPYYRLSRSDNITAGDGKGRCFVGACVCEEELVSALVASSAEQDKVQALQQTLYRAAKADPGRRFHALYDKV
YRGDLLERAWVQVRRNNGAAGVDRVTVADVEVYGVRRFIDELAADLKEGRWRPAPTRRVLIPKPGSSSGQRPLSIPTVRD
RVVQTAVKMVLESVFEADFLPCSVGFRPGLAVHDALQVLVDECWRGRRWVVETDIADCFSAIPHDRLMKAVEERVSDRHV
LTWV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=148, Percent_Identity=29.0540540540541, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6226520, Length=121, Percent_Identity=33.0578512396694, Blast_Score=86, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 27554; Mature: 27423

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCRVGSRRRPYYRLSRSDNITAGDGKGRCFVGACVCEEELVSALVASSAEQDKVQALQQ
CCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
TLYRAAKADPGRRFHALYDKVYRGDLLERAWVQVRRNNGAAGVDRVTVADVEVYGVRRFI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHH
DELAADLKEGRWRPAPTRRVLIPKPGSSSGQRPLSIPTVRDRVVQTAVKMVLESVFEADF
HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LPCSVGFRPGLAVHDALQVLVDECWRGRRWVVETDIADCFSAIPHDRLMKAVEERVSDRH
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHCCCE
VLTWV
EEEEC
>Mature Secondary Structure 
TCRVGSRRRPYYRLSRSDNITAGDGKGRCFVGACVCEEELVSALVASSAEQDKVQALQQ
CCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHH
TLYRAAKADPGRRFHALYDKVYRGDLLERAWVQVRRNNGAAGVDRVTVADVEVYGVRRFI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHH
DELAADLKEGRWRPAPTRRVLIPKPGSSSGQRPLSIPTVRDRVVQTAVKMVLESVFEADF
HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LPCSVGFRPGLAVHDALQVLVDECWRGRRWVVETDIADCFSAIPHDRLMKAVEERVSDRH
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHCCCE
VLTWV
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]