| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314813
Identifier: 158314813
GI number: 158314813
Start: 3524959
End: 3526182
Strand: Direct
Name: 158314813
Synonym: Franean1_2998
Alternate gene names: NA
Gene position: 3524959-3526182 (Clockwise)
Preceding gene: 158314809
Following gene: 158314815
Centisome position: 39.24
GC content: 71.41
Gene sequence:
>1224_bases GTGAGCACTGTGTTCATTAGGCCGCTGATGGTTCTCCCGCTGGCTGCTCACGGTGATCGGCATGAAGGGTGGGAGAGGCG TTGCGGCTGTTCATCGGGGACGGGTTGGGTGGAAGACCACCACGATGTGGAGGTGATGGATGCCTCGGAGCGCCGGCTGG CGAAGGCCCGGCTGCCCGAGGGAGTGACCGGCATGGCCCGGCTGCACGCGCTGGTCGGCGAGCACGCCGGCGACGCCGCC GATGAGGTCGAGGTGTTGGTCGGGATCGAGACCGACCGCGGCCCGTGGGTGCAGGCGCTGCTCGCCGCTGGCTACACCGT GTTCGCGATCAACCCGCTGCAGGCGTCCCACTACCGGGCGCGGCACGCCGTGTCGGGCGCCAAGAGCGACGCCGCCGACG CACACGCGCTCGCGGACATGGTCCGCACCGACTCCCACCAGCTGCGGCCGGTCGCCGGGGACACCGCCGCCGTCGAGGCG GTCAAGGTCGTGACCCGCACCCACAAGACCCTGATCTGGGAACGCACCCGCCACACCCAGCGGCTGCGACACGCGCTGCG GGACTACTTCCCCGCCGCGCTGGCCGCGTTCGACGACCTGGACGCCGCCGACACCCTGGAACTGCTGGCCAAGGCACCGA CCCCGGCCGAGGCGGCCAGGCTGACCGTCAGCCAGATCAGCGCCGCGCTGCGCCACGCCCACCACCGCGACGTCCCCACC AAGGCCGCGGCGATCCAGGCCGCGCTGCGCGCGGAGCACCTCGACCAGCCCGACGTCGTCACCGCCGCCTACGCCGCCTC GGTCCGCGCGCTGATCGCGGTCCTGGCCGTGCTGAACGAGCAGGTCAAGACCCTGCAAGGGCAGGTGGCCGAGCATTTTG GCGACGACCCCGACCGGTACACCACGGCCAAGGCCCGCAAGAACTACGCCGGTACGTCCCCGATCACCCGCGCCTCCGGC AGGAAGAAGACCGTCTCCGCCCGGTTCGTCCACAACGACCGGCTCGTCGACGCCCTCATCACCCAGGCCTTCTCCAGCCT GCAGGCGTCCCCCGGAGCCCGCGCCTACTACGACCGGCAACGCGAACGCGGAGCCAACCACAACGCCGCCCTGCGCCAGC TCGCCAACCGCCTCGTCGGCATCCTGCACGGCTGCCTCAAGACAGCCACGCCCTACGACGAAGCGACCGCCTGGCCGCGT CACGCCGAACAGCTCGCTGCTTGA
Upstream 100 bases:
>100_bases TCGGTGCTCCTGGACTTTGAGTCCTGTCGAAAGACCGTGCCCCTGCTGGTTGGCCGGGAGAGTCGATCGCTGATGGGATG TCGTGCCCGCTGCTCGCGGC
Downstream 100 bases:
>100_bases CACATCAGCTCCTGGGATGTCTTTCGTCGTCGCCGCCAGCGACCGCGCGGCGCCGTCCCTCGGCCGGGCCGGACTCGACG GTGTCACGGCGCGTCTCGTC
Product: transposase IS111A/IS1328/IS1533
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSTVFIRPLMVLPLAAHGDRHEGWERRCGCSSGTGWVEDHHDVEVMDASERRLAKARLPEGVTGMARLHALVGEHAGDAA DEVEVLVGIETDRGPWVQALLAAGYTVFAINPLQASHYRARHAVSGAKSDAADAHALADMVRTDSHQLRPVAGDTAAVEA VKVVTRTHKTLIWERTRHTQRLRHALRDYFPAALAAFDDLDAADTLELLAKAPTPAEAARLTVSQISAALRHAHHRDVPT KAAAIQAALRAEHLDQPDVVTAAYAASVRALIAVLAVLNEQVKTLQGQVAEHFGDDPDRYTTAKARKNYAGTSPITRASG RKKTVSARFVHNDRLVDALITQAFSSLQASPGARAYYDRQRERGANHNAALRQLANRLVGILHGCLKTATPYDEATAWPR HAEQLAA
Sequences:
>Translated_407_residues MSTVFIRPLMVLPLAAHGDRHEGWERRCGCSSGTGWVEDHHDVEVMDASERRLAKARLPEGVTGMARLHALVGEHAGDAA DEVEVLVGIETDRGPWVQALLAAGYTVFAINPLQASHYRARHAVSGAKSDAADAHALADMVRTDSHQLRPVAGDTAAVEA VKVVTRTHKTLIWERTRHTQRLRHALRDYFPAALAAFDDLDAADTLELLAKAPTPAEAARLTVSQISAALRHAHHRDVPT KAAAIQAALRAEHLDQPDVVTAAYAASVRALIAVLAVLNEQVKTLQGQVAEHFGDDPDRYTTAKARKNYAGTSPITRASG RKKTVSARFVHNDRLVDALITQAFSSLQASPGARAYYDRQRERGANHNAALRQLANRLVGILHGCLKTATPYDEATAWPR HAEQLAA >Mature_406_residues STVFIRPLMVLPLAAHGDRHEGWERRCGCSSGTGWVEDHHDVEVMDASERRLAKARLPEGVTGMARLHALVGEHAGDAAD EVEVLVGIETDRGPWVQALLAAGYTVFAINPLQASHYRARHAVSGAKSDAADAHALADMVRTDSHQLRPVAGDTAAVEAV KVVTRTHKTLIWERTRHTQRLRHALRDYFPAALAAFDDLDAADTLELLAKAPTPAEAARLTVSQISAALRHAHHRDVPTK AAAIQAALRAEHLDQPDVVTAAYAASVRALIAVLAVLNEQVKTLQGQVAEHFGDDPDRYTTAKARKNYAGTSPITRASGR KKTVSARFVHNDRLVDALITQAFSSLQASPGARAYYDRQRERGANHNAALRQLANRLVGILHGCLKTATPYDEATAWPRH AEQLAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 44183; Mature: 44052
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVFIRPLMVLPLAAHGDRHEGWERRCGCSSGTGWVEDHHDVEVMDASERRLAKARLPE CCCEEECHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCC GVTGMARLHALVGEHAGDAADEVEVLVGIETDRGPWVQALLAAGYTVFAINPLQASHYRA CHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCEEEEECCCHHHHHHH RHAVSGAKSDAADAHALADMVRTDSHQLRPVAGDTAAVEAVKVVTRTHKTLIWERTRHTQ HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RLRHALRDYFPAALAAFDDLDAADTLELLAKAPTPAEAARLTVSQISAALRHAHHRDVPT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH KAAAIQAALRAEHLDQPDVVTAAYAASVRALIAVLAVLNEQVKTLQGQVAEHFGDDPDRY HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH TTAKARKNYAGTSPITRASGRKKTVSARFVHNDRLVDALITQAFSSLQASPGARAYYDRQ HHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RERGANHNAALRQLANRLVGILHGCLKTATPYDEATAWPRHAEQLAA HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCC >Mature Secondary Structure STVFIRPLMVLPLAAHGDRHEGWERRCGCSSGTGWVEDHHDVEVMDASERRLAKARLPE CCEEECHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCC GVTGMARLHALVGEHAGDAADEVEVLVGIETDRGPWVQALLAAGYTVFAINPLQASHYRA CHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCEEEEECCCHHHHHHH RHAVSGAKSDAADAHALADMVRTDSHQLRPVAGDTAAVEAVKVVTRTHKTLIWERTRHTQ HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RLRHALRDYFPAALAAFDDLDAADTLELLAKAPTPAEAARLTVSQISAALRHAHHRDVPT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH KAAAIQAALRAEHLDQPDVVTAAYAASVRALIAVLAVLNEQVKTLQGQVAEHFGDDPDRY HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH TTAKARKNYAGTSPITRASGRKKTVSARFVHNDRLVDALITQAFSSLQASPGARAYYDRQ HHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RERGANHNAALRQLANRLVGILHGCLKTATPYDEATAWPRHAEQLAA HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2575701; 12000953 [H]