| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314806
Identifier: 158314806
GI number: 158314806
Start: 3516807
End: 3517673
Strand: Direct
Name: 158314806
Synonym: Franean1_2990
Alternate gene names: NA
Gene position: 3516807-3517673 (Clockwise)
Preceding gene: 158314797
Following gene: 158314809
Centisome position: 39.15
GC content: 65.17
Gene sequence:
>867_bases ATGAGTCATCCTACGTCAAGCCGCGGTCAGAACGGCCTCCCCTCTCCCTGTCTGTCACCGGCTCGCACGGGGGATCGGCG GAGCGCCGAGAGAAAAATTGATCAATCAGTAGTGGAATGTCACACGAAGAGGCGAGTCGACCTCAGTTCTGGAGCGCACT ATCATCTGGACATGCCGCAGACTGCCAAGAATCGGCCACCGAGCCGTCACCAAGCCGCTGACGCACCAGCCCAGACCCGT CTAAACCGTCGCAAGGCGCGTACCCGGCAGGCGCTCATCGACGCGGCCAAGACCTTCCTCGCCAAGCAGGGCAGCACCGC CGACGTGAGCATCCTGGAGATCACCGAGGCGGCCGACGTCGGCTTCGGCTCCTTCTACAATCACTTCGGCTCCAAGACCG AGCTGTTCCACGCCGCGATCGACGACGTGCTCGAAGAGCACGGGCGGATGCTCGACAAATGTGCTGCCGGCCTCGATGAC CCTGCTGAGGTGTTTGCTGTGTCCGTGCGGCTGACCGGACGGCTGGTCCCGACCCATCCACAGATGGCGCGCATCCTCAC CCAGACCGGCCTGTCCTACCTCGACTCCGACCGAGGTCTAGCCCCTCGCGCGCTCCACGACGTGCGCTGCGCCATTGAGG CTGGCCGGTTCAAGGTCGCCAACCCCTACGTCGCCCTCGCCACCGCGGGCGGATCGCTGCTGGCTTTCCTCCACATTTGG CTCGCTCATCCGGACAAAGTCGACGACGCGGCCTGTGACGAGCTGGCCGAACAGATCCTGCGGATGTTCGGTATGCCTCC CCGGACGGCGCGCGCGATCGCCCACCGACCCCTGCCCACCGCACCGTCATCCGCAGGTTCGGCCTAG
Upstream 100 bases:
>100_bases GCCGCCTGGTCCGCGGTCGCTGGGGGCTGCCCGGTCACCGACTCTGGAACCATGGACTGCCTCCTGCAGTTCATCCTCAC TGATGAGGAAATCATCAGTG
Downstream 100 bases:
>100_bases AATCAACCCGGGCAGACATCGGTCTTCCTTTCCCGAGCTGGCCGTATTGGGGGCCGCCGTCGCGAGGTTTCTGCCGAAGT GAGGCAGTGGGGTGCGCGGC
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; TetR Family Regulator; TetR-Family Protein Transcriptional Regulator
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSHPTSSRGQNGLPSPCLSPARTGDRRSAERKIDQSVVECHTKRRVDLSSGAHYHLDMPQTAKNRPPSRHQAADAPAQTR LNRRKARTRQALIDAAKTFLAKQGSTADVSILEITEAADVGFGSFYNHFGSKTELFHAAIDDVLEEHGRMLDKCAAGLDD PAEVFAVSVRLTGRLVPTHPQMARILTQTGLSYLDSDRGLAPRALHDVRCAIEAGRFKVANPYVALATAGGSLLAFLHIW LAHPDKVDDAACDELAEQILRMFGMPPRTARAIAHRPLPTAPSSAGSA
Sequences:
>Translated_288_residues MSHPTSSRGQNGLPSPCLSPARTGDRRSAERKIDQSVVECHTKRRVDLSSGAHYHLDMPQTAKNRPPSRHQAADAPAQTR LNRRKARTRQALIDAAKTFLAKQGSTADVSILEITEAADVGFGSFYNHFGSKTELFHAAIDDVLEEHGRMLDKCAAGLDD PAEVFAVSVRLTGRLVPTHPQMARILTQTGLSYLDSDRGLAPRALHDVRCAIEAGRFKVANPYVALATAGGSLLAFLHIW LAHPDKVDDAACDELAEQILRMFGMPPRTARAIAHRPLPTAPSSAGSA >Mature_287_residues SHPTSSRGQNGLPSPCLSPARTGDRRSAERKIDQSVVECHTKRRVDLSSGAHYHLDMPQTAKNRPPSRHQAADAPAQTRL NRRKARTRQALIDAAKTFLAKQGSTADVSILEITEAADVGFGSFYNHFGSKTELFHAAIDDVLEEHGRMLDKCAAGLDDP AEVFAVSVRLTGRLVPTHPQMARILTQTGLSYLDSDRGLAPRALHDVRCAIEAGRFKVANPYVALATAGGSLLAFLHIWL AHPDKVDDAACDELAEQILRMFGMPPRTARAIAHRPLPTAPSSAGSA
Specific function: Unknown
COG id: COG1309
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31164; Mature: 31032
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHPTSSRGQNGLPSPCLSPARTGDRRSAERKIDQSVVECHTKRRVDLSSGAHYHLDMPQ CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCH TAKNRPPSRHQAADAPAQTRLNRRKARTRQALIDAAKTFLAKQGSTADVSILEITEAADV HHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHC GFGSFYNHFGSKTELFHAAIDDVLEEHGRMLDKCAAGLDDPAEVFAVSVRLTGRLVPTHP CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEEECEECCCCH QMARILTQTGLSYLDSDRGLAPRALHDVRCAIEAGRFKVANPYVALATAGGSLLAFLHIW HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCEEEEEECCHHHHHHHHHH LAHPDKVDDAACDELAEQILRMFGMPPRTARAIAHRPLPTAPSSAGSA HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SHPTSSRGQNGLPSPCLSPARTGDRRSAERKIDQSVVECHTKRRVDLSSGAHYHLDMPQ CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCH TAKNRPPSRHQAADAPAQTRLNRRKARTRQALIDAAKTFLAKQGSTADVSILEITEAADV HHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHC GFGSFYNHFGSKTELFHAAIDDVLEEHGRMLDKCAAGLDDPAEVFAVSVRLTGRLVPTHP CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEEECEECCCCH QMARILTQTGLSYLDSDRGLAPRALHDVRCAIEAGRFKVANPYVALATAGGSLLAFLHIW HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCEEEEEECCHHHHHHHHHH LAHPDKVDDAACDELAEQILRMFGMPPRTARAIAHRPLPTAPSSAGSA HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA