| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314678
Identifier: 158314678
GI number: 158314678
Start: 3372813
End: 3373727
Strand: Direct
Name: 158314678
Synonym: Franean1_2857
Alternate gene names: NA
Gene position: 3372813-3373727 (Clockwise)
Preceding gene: 158314676
Following gene: 158314679
Centisome position: 37.55
GC content: 66.99
Gene sequence:
>915_bases ATGTCGCTTAGTGTCGTGGTCGGTGCCGGCGGCACCGGAGTGGCCACCGCGGAACTACTCGCCGAGTCGGGGCACGACGT CCGGTTGGTGACCCGCCGGGGCAGCGGGCCCGAGCATCCACGCATTGAGTTGATCAAGGCCGACGCCAACGACACGCCGC GGCTGGTCGAGCTGACCAAGGGTGCAAGCATCCTGTTCAACTGCGCGGTCCCCGCCTATCACCGATGGGCGACCGAGTTC ATGCCCCTTGCCCGGTCGCTGCTCAATGCAGCCGAGCGGACCGGGGTCGGTTACGTGATGCTCGGGAATCTCTATGCGTA CGGGCCCGTCGACGGCCCGATGTTCGAGGACCGGCCGCTGGTGCCGAACACCGTGAAGGGCCGCGTCCGCCGGCAGGCGT GGGACGAAGCGATTGCCGCGCATCGCGCGGGCCGCGTGCGGGTTACCGAGGTCCGCGCGAGTGACTTCATCGGCACTGGC GCGATGTCGGTTTTCACGATCATGGTCGCGCCGAAGGTCCTGGCCGGTAAGGCCGCGCTCTTTCCGGCCGACCTGGACGC ACCGCATACCTGGACGGATACCCAGGATGCTGCTCGCGCTCTCGTCGCGGCAGGCGAGAACGACCAGGCGTGGGGGCGGG CATGGCACGTTCCGAGCAACCCGCCGCTTTCCTCGCGTCAGCTCGCGGTCGCTCTCGCAGAGCACACCGGAGCGCCCCCT GCCAAGCTCCGCCGGATGCCCGGCTCCATGCTCAGACTCGCTGGCCTGTTCTCCCCGACCGTAGGGGAGATACCCGAGAT GCAATACCAGCTTCAGCGACCGTTCGTCATGGACTCGTCGTTGACCCAGGATGTCCTCGGCCTGAAGCCGAGCTTACTAG AGGAAATTCTCGACAGAACCGCGGCAGCTGTCTGA
Upstream 100 bases:
>100_bases TGCATGGCCAGATCCTCCGGAGGTTTGTCATTCTGGCCAGTACTCTAACTGCGGAGCGACGCCCATAGTGAGCTCATTCG CTTGCACATGGAGGAGAGTC
Downstream 100 bases:
>100_bases TCCCGCCACGGCATCGACTTGTCCCGTTGGTCTGGCGGTAACCGCCGGACCAGCGGGACTTCCGGTCCGAAACGACCGGA GAGTCCGGCGGCCCACGCCG
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: NAD Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase; NAD-Dependent Epimerase/Dehydratase Family Protein; Sugar Dehydratase/Epimerase; Saccharopine Dehydrogenase Related Protein; NmrA-Like Protein/Nucleoside-Diphosphate-Sugar Epimerase; NmrA Family Protein; Short-Chain Dehydrogenase/Reductase SDR; NAD Dependent Epimerase/Dehydratase Family; Saccharopine Dehydrogenase; NAD Dependent Epimerase/Dehydratase
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MSLSVVVGAGGTGVATAELLAESGHDVRLVTRRGSGPEHPRIELIKADANDTPRLVELTKGASILFNCAVPAYHRWATEF MPLARSLLNAAERTGVGYVMLGNLYAYGPVDGPMFEDRPLVPNTVKGRVRRQAWDEAIAAHRAGRVRVTEVRASDFIGTG AMSVFTIMVAPKVLAGKAALFPADLDAPHTWTDTQDAARALVAAGENDQAWGRAWHVPSNPPLSSRQLAVALAEHTGAPP AKLRRMPGSMLRLAGLFSPTVGEIPEMQYQLQRPFVMDSSLTQDVLGLKPSLLEEILDRTAAAV
Sequences:
>Translated_304_residues MSLSVVVGAGGTGVATAELLAESGHDVRLVTRRGSGPEHPRIELIKADANDTPRLVELTKGASILFNCAVPAYHRWATEF MPLARSLLNAAERTGVGYVMLGNLYAYGPVDGPMFEDRPLVPNTVKGRVRRQAWDEAIAAHRAGRVRVTEVRASDFIGTG AMSVFTIMVAPKVLAGKAALFPADLDAPHTWTDTQDAARALVAAGENDQAWGRAWHVPSNPPLSSRQLAVALAEHTGAPP AKLRRMPGSMLRLAGLFSPTVGEIPEMQYQLQRPFVMDSSLTQDVLGLKPSLLEEILDRTAAAV >Mature_303_residues SLSVVVGAGGTGVATAELLAESGHDVRLVTRRGSGPEHPRIELIKADANDTPRLVELTKGASILFNCAVPAYHRWATEFM PLARSLLNAAERTGVGYVMLGNLYAYGPVDGPMFEDRPLVPNTVKGRVRRQAWDEAIAAHRAGRVRVTEVRASDFIGTGA MSVFTIMVAPKVLAGKAALFPADLDAPHTWTDTQDAARALVAAGENDQAWGRAWHVPSNPPLSSRQLAVALAEHTGAPPA KLRRMPGSMLRLAGLFSPTVGEIPEMQYQLQRPFVMDSSLTQDVLGLKPSLLEEILDRTAAAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32615; Mature: 32484
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSVVVGAGGTGVATAELLAESGHDVRLVTRRGSGPEHPRIELIKADANDTPRLVELTK CCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEECC GASILFNCAVPAYHRWATEFMPLARSLLNAAERTGVGYVMLGNLYAYGPVDGPMFEDRPL CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCC VPNTVKGRVRRQAWDEAIAAHRAGRVRVTEVRASDFIGTGAMSVFTIMVAPKVLAGKAAL CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEE FPADLDAPHTWTDTQDAARALVAAGENDQAWGRAWHVPSNPPLSSRQLAVALAEHTGAPP CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHEEEEHHHCCCCH AKLRRMPGSMLRLAGLFSPTVGEIPEMQYQLQRPFVMDSSLTQDVLGLKPSLLEEILDRT HHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHCCCEEECCHHHHHHHCCCHHHHHHHHHHH AAAV HCCC >Mature Secondary Structure SLSVVVGAGGTGVATAELLAESGHDVRLVTRRGSGPEHPRIELIKADANDTPRLVELTK CEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEECC GASILFNCAVPAYHRWATEFMPLARSLLNAAERTGVGYVMLGNLYAYGPVDGPMFEDRPL CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCC VPNTVKGRVRRQAWDEAIAAHRAGRVRVTEVRASDFIGTGAMSVFTIMVAPKVLAGKAAL CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEE FPADLDAPHTWTDTQDAARALVAAGENDQAWGRAWHVPSNPPLSSRQLAVALAEHTGAPP CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHEEEEHHHCCCCH AKLRRMPGSMLRLAGLFSPTVGEIPEMQYQLQRPFVMDSSLTQDVLGLKPSLLEEILDRT HHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHCCCEEECCHHHHHHHCCCHHHHHHHHHHH AAAV HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA