| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314634
Identifier: 158314634
GI number: 158314634
Start: 3327822
End: 3329387
Strand: Direct
Name: 158314634
Synonym: Franean1_2813
Alternate gene names: NA
Gene position: 3327822-3329387 (Clockwise)
Preceding gene: 158314632
Following gene: 158314635
Centisome position: 37.05
GC content: 68.07
Gene sequence:
>1566_bases ATGGAGAACAGCGCGTCCTGGATAGTTGAATTCTATGACCTTTCAGTCAATCTTCCTCAGGTTGAGGTTGAGGGGATCGC CGGGCTGGGTGATGTGCACGAGCGGGCGGTGCGTAACGGCGCGCGGCACGGCACGCCACTGATTATGAAAACGTCGGGTA TGGTCGATTCCCGGGTTAACCTGTTCTTCCGCACCGGCCCCATGGCCGCGGCGCGACCATCGACGTGGCGGCGTTACGCG TACTCGCTGGTGGTCTGGCTGAACTTCCTGGAGGTGTTCGGGCGGCGCTGGGATGCGGCGACTGCGGGCGATGTGGAGGC GTTCAAGGACTGGCGGGTGACCGACCGGTCGAACGACGGCAGGGTCGCACCGGCGAGTTTCGAGGCTGACAGGGCGGCGC TGAACTGCTTCTACTCGTGGGCGGCGGTGCGCTACGGCGTGGTCAACCCGGTTCCCTCCGGCCGCTGGGTGCGTGCTGGA CGGCCAGGTGACGACGTCGATGGCCGGCGTGGGTCTCGGGACCCGCTGCGCCCGGCGGGGGCGAGACGGCGGCAGGTGAA GTGGCTGTTGCGGACGGCGTTCGAGCAGTGGCGGGACATCGGCCTGCGCGGCTACGGCTTCGACGGCGTCCGGCGCCCGG ACTGGTGCGGCCCGTATGAGGACCGGGATGCCGCGTTCGTCGACGGCCTGTACGGGACGGGGCTGCGGCTGACCGAATGG GCGAGCATCCTCGACGTCGAGCTACCGGGCGAGGGTAACGATCGTTTTCTCCGGGCGTGGCTGGCGGCGGCGTGCGCGAA GGGCGGCCGGCACGGGCGGGTCTACCGGATACCGCGTCGGGTGCTGACGGCGGTGCGCGGCTATCTGGACCCTCAGGAGG GTTCACGGGGCGAGAGGGTCCGCTGGGCACAGCGAGCCGGCCGCTACGAACAGCTGACCGTCCGGAGGATCGTCACCGGC TACAACCCCCGCTCCCGCATCCTCACCTTGGAGGGCACGGCCGGGCCGGTCCGGATGTCGGTGGACGTGCTGGGCCCGCA CGAGCGCCGCCACTTGTTCCGCCGGACTGACAACGGTCTGGAGCCGCTGGCTGTGTGGCTGGGACGCGATGGGCTGCCGA AACATCCGCATGGCTGGGAGGACACGTTCACCGCCGCAAACCGTCGCGTTACAGGGGCGTGGATGGCCGCGGGCCGGGCG GGCAGCGCGCCATTGTGGTGCACGCCGCATATGTGTCGGCACAGCTTCGCGCTGAAATGGTTCTCGATCCTGTCGATCGT GTGGGACAACCGGCTGACGGGTTTCACTGCCGAGGAGCTGAAGGACTATCGCGCCCAGTTCGGTGATATCTGGTATCAGC TTGCCGGTCTGCTCGGGCACGCCGATCCGTCGACGACCCGTGATCATTATCTGGAACCGTTCACCCGTTTGGACGTCGAC TATCTGATGGCGCTGCTGGACGGCGAGGAACAGACGGCCGTCGACACGCTGCTGCGCGCGGTGGCCGCTGACAGCGGACA CGTGCTCACGGGGACGGACCTGAGCGGCACGGGGAGCGCCGGGTGA
Upstream 100 bases:
>100_bases CCCGGCGGAGCGCGGCGGCAACGTCCTCTCCGTTTTCGACTTTGCCTGAGGTTCTCTAGGCTTCGCTCCGTTGTCGGTTC GAGAGCCCCGGGAGATCGTG
Downstream 100 bases:
>100_bases GCGGTATGGCGGGTGGCCCCGGCGTGCAACGCAGCCGGTTGCGAGCTGGCGGCCACCGCAGCGGCTGGAGGCGGACGGGG ACGGCCTGCGGGTGCGGTTC
Product: integrase domain-containing protein
Products: NA
Alternate protein names: Phage Integrase-Like SAM-Like; Phage Integrase Domain/SAM Domain-Containing Protein; Integrase Domain Protein SAM Domain Protein; Site-Specific Recombinase XerD; Phage Integrase Family Domain-Containing Protein; Phage Integrase Family Protein; Phage Integrase Family Domain Protein; Phage Type Integrase/Recombinase; Orf_Bo
Number of amino acids: Translated: 521; Mature: 521
Protein sequence:
>521_residues MENSASWIVEFYDLSVNLPQVEVEGIAGLGDVHERAVRNGARHGTPLIMKTSGMVDSRVNLFFRTGPMAAARPSTWRRYA YSLVVWLNFLEVFGRRWDAATAGDVEAFKDWRVTDRSNDGRVAPASFEADRAALNCFYSWAAVRYGVVNPVPSGRWVRAG RPGDDVDGRRGSRDPLRPAGARRRQVKWLLRTAFEQWRDIGLRGYGFDGVRRPDWCGPYEDRDAAFVDGLYGTGLRLTEW ASILDVELPGEGNDRFLRAWLAAACAKGGRHGRVYRIPRRVLTAVRGYLDPQEGSRGERVRWAQRAGRYEQLTVRRIVTG YNPRSRILTLEGTAGPVRMSVDVLGPHERRHLFRRTDNGLEPLAVWLGRDGLPKHPHGWEDTFTAANRRVTGAWMAAGRA GSAPLWCTPHMCRHSFALKWFSILSIVWDNRLTGFTAEELKDYRAQFGDIWYQLAGLLGHADPSTTRDHYLEPFTRLDVD YLMALLDGEEQTAVDTLLRAVAADSGHVLTGTDLSGTGSAG
Sequences:
>Translated_521_residues MENSASWIVEFYDLSVNLPQVEVEGIAGLGDVHERAVRNGARHGTPLIMKTSGMVDSRVNLFFRTGPMAAARPSTWRRYA YSLVVWLNFLEVFGRRWDAATAGDVEAFKDWRVTDRSNDGRVAPASFEADRAALNCFYSWAAVRYGVVNPVPSGRWVRAG RPGDDVDGRRGSRDPLRPAGARRRQVKWLLRTAFEQWRDIGLRGYGFDGVRRPDWCGPYEDRDAAFVDGLYGTGLRLTEW ASILDVELPGEGNDRFLRAWLAAACAKGGRHGRVYRIPRRVLTAVRGYLDPQEGSRGERVRWAQRAGRYEQLTVRRIVTG YNPRSRILTLEGTAGPVRMSVDVLGPHERRHLFRRTDNGLEPLAVWLGRDGLPKHPHGWEDTFTAANRRVTGAWMAAGRA GSAPLWCTPHMCRHSFALKWFSILSIVWDNRLTGFTAEELKDYRAQFGDIWYQLAGLLGHADPSTTRDHYLEPFTRLDVD YLMALLDGEEQTAVDTLLRAVAADSGHVLTGTDLSGTGSAG >Mature_521_residues MENSASWIVEFYDLSVNLPQVEVEGIAGLGDVHERAVRNGARHGTPLIMKTSGMVDSRVNLFFRTGPMAAARPSTWRRYA YSLVVWLNFLEVFGRRWDAATAGDVEAFKDWRVTDRSNDGRVAPASFEADRAALNCFYSWAAVRYGVVNPVPSGRWVRAG RPGDDVDGRRGSRDPLRPAGARRRQVKWLLRTAFEQWRDIGLRGYGFDGVRRPDWCGPYEDRDAAFVDGLYGTGLRLTEW ASILDVELPGEGNDRFLRAWLAAACAKGGRHGRVYRIPRRVLTAVRGYLDPQEGSRGERVRWAQRAGRYEQLTVRRIVTG YNPRSRILTLEGTAGPVRMSVDVLGPHERRHLFRRTDNGLEPLAVWLGRDGLPKHPHGWEDTFTAANRRVTGAWMAAGRA GSAPLWCTPHMCRHSFALKWFSILSIVWDNRLTGFTAEELKDYRAQFGDIWYQLAGLLGHADPSTTRDHYLEPFTRLDVD YLMALLDGEEQTAVDTLLRAVAADSGHVLTGTDLSGTGSAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58445; Mature: 58445
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENSASWIVEFYDLSVNLPQVEVEGIAGLGDVHERAVRNGARHGTPLIMKTSGMVDSRVN CCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCEE LFFRTGPMAAARPSTWRRYAYSLVVWLNFLEVFGRRWDAATAGDVEAFKDWRVTDRSNDG EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCC RVAPASFEADRAALNCFYSWAAVRYGVVNPVPSGRWVRAGRPGDDVDGRRGSRDPLRPAG CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC ARRRQVKWLLRTAFEQWRDIGLRGYGFDGVRRPDWCGPYEDRDAAFVDGLYGTGLRLTEW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHCCCCCHHHH ASILDVELPGEGNDRFLRAWLAAACAKGGRHGRVYRIPRRVLTAVRGYLDPQEGSRGERV HHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCHH RWAQRAGRYEQLTVRRIVTGYNPRSRILTLEGTAGPVRMSVDVLGPHERRHLFRRTDNGL HHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCC EPLAVWLGRDGLPKHPHGWEDTFTAANRRVTGAWMAAGRAGSAPLWCTPHMCRHSFALKW CHHHHHHCCCCCCCCCCCCCHHHHHCCCEECCHHHCCCCCCCCCEEECHHHHHHHHHHHH FSILSIVWDNRLTGFTAEELKDYRAQFGDIWYQLAGLLGHADPSTTRDHYLEPFTRLDVD HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHCHH YLMALLDGEEQTAVDTLLRAVAADSGHVLTGTDLSGTGSAG HHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC >Mature Secondary Structure MENSASWIVEFYDLSVNLPQVEVEGIAGLGDVHERAVRNGARHGTPLIMKTSGMVDSRVN CCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCEE LFFRTGPMAAARPSTWRRYAYSLVVWLNFLEVFGRRWDAATAGDVEAFKDWRVTDRSNDG EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCC RVAPASFEADRAALNCFYSWAAVRYGVVNPVPSGRWVRAGRPGDDVDGRRGSRDPLRPAG CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC ARRRQVKWLLRTAFEQWRDIGLRGYGFDGVRRPDWCGPYEDRDAAFVDGLYGTGLRLTEW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHCCCCCHHHH ASILDVELPGEGNDRFLRAWLAAACAKGGRHGRVYRIPRRVLTAVRGYLDPQEGSRGERV HHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCHH RWAQRAGRYEQLTVRRIVTGYNPRSRILTLEGTAGPVRMSVDVLGPHERRHLFRRTDNGL HHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCC EPLAVWLGRDGLPKHPHGWEDTFTAANRRVTGAWMAAGRAGSAPLWCTPHMCRHSFALKW CHHHHHHCCCCCCCCCCCCCHHHHHCCCEECCHHHCCCCCCCCCEEECHHHHHHHHHHHH FSILSIVWDNRLTGFTAEELKDYRAQFGDIWYQLAGLLGHADPSTTRDHYLEPFTRLDVD HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHCHH YLMALLDGEEQTAVDTLLRAVAADSGHVLTGTDLSGTGSAG HHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA