| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314475
Identifier: 158314475
GI number: 158314475
Start: 3133786
End: 3134613
Strand: Direct
Name: 158314475
Synonym: Franean1_2648
Alternate gene names: NA
Gene position: 3133786-3134613 (Clockwise)
Preceding gene: 158314472
Following gene: 158314476
Centisome position: 34.89
GC content: 65.46
Gene sequence:
>828_bases ATGAGAGCGATCAGTATTCGATCGACGCGAGTCGTGGCCAACGCATCGACGCACCTGGCCGCTCGACGGTTCACGATGAT TATCAAGGCCTTCATCAGTGTTGACGGCTCGGGTGGTGAGGTACCGCACTGGCCACCACGTCGGCGGTTTGTCGTTCGTC CTCGGCGCCCGCGTGCCCGATGTCCCCTACGTCGTCAAAGCGTGGCGCGAACGCCACCCCGGCGCCGAAATCCCGGACGG GCATGTGTTCGTCCAGCCGTGGCCCGCCGGCCCCAACCACACGGTCTTCTACCAGTAAAAGGCCGACCGGGCACGGCGCA CCCTGCGCGGGATCGACCAGCAAGTCGCCAAAGCCGAGAACGCCGTCGCCGGGAAGACCCTGGTGAAACGGAACCGGTAC GTGCGCCTCACCGGCGCCAGCAAGTTGGTCAACCGCACGCTGGAAGCCGAGAACCGCGACCTGGCAGGCATAAAGGGCTA CGTCACCAACCTGCCAGACCTCGCGACGCCCAACAGGTCATCAGCACCTACAGCCGGCTGCTGAACGTCGAGAAGAGCTT CCGGATGAGCAAGTCCGACCTCGCCGCCCGGCCCGTCTACCACCACAAACGCGAATCGATCGAAGCCCACCTGACCGTCG TGTTCGCCGCCCTCGCCCTAAGCCGCTGGATGGAGAACACCACCGGTTGGCCCATCCGCAAGTTCGTTAGGACCGCCCGC CGCTACCGCAGCATCACCATTCAGGCCGGCGAACACACCATCACCGCTGCCGACCCCCTGCCCGACGACCTACGAACCGC CCTCGCCGCCGTCCACGGCACGCACTAA
Upstream 100 bases:
>100_bases TGACATAGTCAGCACGTTTCCGGGGATCCTGGACGTATACGTGTCCTACCACCTCGACTCAGCAGAGTCGCTCTGGTGGG AATGATGTCGATCGCCAGAC
Downstream 100 bases:
>100_bases TTGGCCTAAGTCAGGATACAGCAACGAATCCTCAGCCGTCTCGCTGTGCGTGAGAACATGAAGGACGAGAATCTGTTGAG GGTTCGCCGAGGCGTGATCC
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase IS4 Family Protein; Transposase IS4 Family; ISMsm6 Transposase; TnpB Family Transposase
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MRAISIRSTRVVANASTHLAARRFTMIIKAFISVDGSGGEVPHWPPRRRFVVRPRRPRARCPLRRQSVARTPPRRRNPGR ACVRPAVARRPQPHGLLPVKGRPGTAHPARDRPASRQSRERRRREDPGETEPVRAPHRRQQVGQPHAGSREPRPGRHKGL RHQPARPRDAQQVISTYSRLLNVEKSFRMSKSDLAARPVYHHKRESIEAHLTVVFAALALSRWMENTTGWPIRKFVRTAR RYRSITIQAGEHTITAADPLPDDLRTALAAVHGTH
Sequences:
>Translated_275_residues MRAISIRSTRVVANASTHLAARRFTMIIKAFISVDGSGGEVPHWPPRRRFVVRPRRPRARCPLRRQSVARTPPRRRNPGR ACVRPAVARRPQPHGLLPVKGRPGTAHPARDRPASRQSRERRRREDPGETEPVRAPHRRQQVGQPHAGSREPRPGRHKGL RHQPARPRDAQQVISTYSRLLNVEKSFRMSKSDLAARPVYHHKRESIEAHLTVVFAALALSRWMENTTGWPIRKFVRTAR RYRSITIQAGEHTITAADPLPDDLRTALAAVHGTH >Mature_275_residues MRAISIRSTRVVANASTHLAARRFTMIIKAFISVDGSGGEVPHWPPRRRFVVRPRRPRARCPLRRQSVARTPPRRRNPGR ACVRPAVARRPQPHGLLPVKGRPGTAHPARDRPASRQSRERRRREDPGETEPVRAPHRRQQVGQPHAGSREPRPGRHKGL RHQPARPRDAQQVISTYSRLLNVEKSFRMSKSDLAARPVYHHKRESIEAHLTVVFAALALSRWMENTTGWPIRKFVRTAR RYRSITIQAGEHTITAADPLPDDLRTALAAVHGTH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31287; Mature: 31287
Theoretical pI: Translated: 12.54; Mature: 12.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAISIRSTRVVANASTHLAARRFTMIIKAFISVDGSGGEVPHWPPRRRFVVRPRRPRAR CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCC CPLRRQSVARTPPRRRNPGRACVRPAVARRPQPHGLLPVKGRPGTAHPARDRPASRQSRE CCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHH RRRREDPGETEPVRAPHRRQQVGQPHAGSREPRPGRHKGLRHQPARPRDAQQVISTYSRL HHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHH LNVEKSFRMSKSDLAARPVYHHKRESIEAHLTVVFAALALSRWMENTTGWPIRKFVRTAR HHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RYRSITIQAGEHTITAADPLPDDLRTALAAVHGTH HHHEEEEECCCEEEEECCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MRAISIRSTRVVANASTHLAARRFTMIIKAFISVDGSGGEVPHWPPRRRFVVRPRRPRAR CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCC CPLRRQSVARTPPRRRNPGRACVRPAVARRPQPHGLLPVKGRPGTAHPARDRPASRQSRE CCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHH RRRREDPGETEPVRAPHRRQQVGQPHAGSREPRPGRHKGLRHQPARPRDAQQVISTYSRL HHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHH LNVEKSFRMSKSDLAARPVYHHKRESIEAHLTVVFAALALSRWMENTTGWPIRKFVRTAR HHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RYRSITIQAGEHTITAADPLPDDLRTALAAVHGTH HHHEEEEECCCEEEEECCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA