| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is oppD [C]
Identifier: 158314343
GI number: 158314343
Start: 2992098
End: 2993126
Strand: Direct
Name: oppD [C]
Synonym: Franean1_2513
Alternate gene names: 158314343
Gene position: 2992098-2993126 (Clockwise)
Preceding gene: 158314342
Following gene: 158314344
Centisome position: 33.31
GC content: 74.64
Gene sequence:
>1029_bases ATGCCTGAGCCGGGAACCGGCCGGGGGGACCCGCTGCTGACGGTCGACGGCGTTCGGGTCGCCATCGGCGGCGGGCGGAC CGAGGCCGTCCACGGCGTGTCGTTCGAGGTGCGGCGCGGCGAGGCGGTCGGGATCGTCGGGGAGTCCGGCAGCGGCAAGA CGCTGGTCTGCCGGTCGGTGCTCGGGGTGCTCGCGCCCGGCTGCGCGGTGACCGGCGGCACGATCGACTTCGCCGGAACC TCGCTGGTCGGGCTGCCGCGGCGGACCTGGGAGCAGCTGCGCGGTAACCGGATCTCCGCGGTGTTCCAGGACCCGGCCTC GTACCTCAACCCGTCGCAGACGGTGGGCCACCAGCTCGCCGAGCAGCTGCGGGTGAAGGTCGGCAAGCCGCGCAGGGAAG CCCGCACCGCCGCGGTGGCGCTGTTCGACGCGATGGGCCTGCACGAGCCCGAGCGGGTCTACCACCAGTACCCGCACGAA CTGTCCGGCGGCATGCTGCAGCGGGTCGTGCTGGCCATCGCGGTGTCCGGCGAGCCGGAGCTCCTCGTCGCGGACGAGGC GACGACCGCCCTCGACGTCACCATCCAGGCCGAGGTGCTGGAACTGCTGGCCAGGCTGCGCAGGGAGCGCGGGCTGGCCG TCCTGGCCGTCTCGCACGACCTCGCCGTCATCGCCGAGCTCTGCGACCGGGTGCTGGTGTTCTACGCCGGCGAGCTCGTC GAGACCGGCCCGACCGCCGAGGTGCTCGACACGCCGCGGCACCCGTACACCGAGGCGCTGCTGCGGGTCGCCTCGGTCGG CGACTGGGACCGGCGCACCCTCGACGTCATCGACGGCGAGCCGCCGCCGGTCGGCGCCGAGATCCGCGGCTGCCGGTTCG CGGACCGGTGTGCCTTCGCCGCCCCGGAGTGCCGCACCGGCCCGGTGCCGCTGACCGAACAGGCGCCCGGGCGGGCCGTC CGGTGCGTCCGTGCCGACGAGATCGCGCTGAGCGGAGCAGGAGCTACCGGAGCAGGAGCCACCGCATGA
Upstream 100 bases:
>100_bases CGCGGCGCGCCCCGTCCGGAGGCCGTGCCGGCTGTCCCGGGGGCTCCGGCCGTCCCGGGAGCGCCGGCCGTGGTCGTCCC CGAGCAGGAGGAGAGGATCC
Downstream 100 bases:
>100_bases CCAACACCGATCTCGCCGACACCGATCTGGCTGACACCGGCCGTGCCACCGCCGGCCGTGCCACCGCCGGCCGCGCTGAC GATGGCCGCTCTGACGACGG
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MPEPGTGRGDPLLTVDGVRVAIGGGRTEAVHGVSFEVRRGEAVGIVGESGSGKTLVCRSVLGVLAPGCAVTGGTIDFAGT SLVGLPRRTWEQLRGNRISAVFQDPASYLNPSQTVGHQLAEQLRVKVGKPRREARTAAVALFDAMGLHEPERVYHQYPHE LSGGMLQRVVLAIAVSGEPELLVADEATTALDVTIQAEVLELLARLRRERGLAVLAVSHDLAVIAELCDRVLVFYAGELV ETGPTAEVLDTPRHPYTEALLRVASVGDWDRRTLDVIDGEPPPVGAEIRGCRFADRCAFAAPECRTGPVPLTEQAPGRAV RCVRADEIALSGAGATGAGATA
Sequences:
>Translated_342_residues MPEPGTGRGDPLLTVDGVRVAIGGGRTEAVHGVSFEVRRGEAVGIVGESGSGKTLVCRSVLGVLAPGCAVTGGTIDFAGT SLVGLPRRTWEQLRGNRISAVFQDPASYLNPSQTVGHQLAEQLRVKVGKPRREARTAAVALFDAMGLHEPERVYHQYPHE LSGGMLQRVVLAIAVSGEPELLVADEATTALDVTIQAEVLELLARLRRERGLAVLAVSHDLAVIAELCDRVLVFYAGELV ETGPTAEVLDTPRHPYTEALLRVASVGDWDRRTLDVIDGEPPPVGAEIRGCRFADRCAFAAPECRTGPVPLTEQAPGRAV RCVRADEIALSGAGATGAGATA >Mature_341_residues PEPGTGRGDPLLTVDGVRVAIGGGRTEAVHGVSFEVRRGEAVGIVGESGSGKTLVCRSVLGVLAPGCAVTGGTIDFAGTS LVGLPRRTWEQLRGNRISAVFQDPASYLNPSQTVGHQLAEQLRVKVGKPRREARTAAVALFDAMGLHEPERVYHQYPHEL SGGMLQRVVLAIAVSGEPELLVADEATTALDVTIQAEVLELLARLRRERGLAVLAVSHDLAVIAELCDRVLVFYAGELVE TGPTAEVLDTPRHPYTEALLRVASVGDWDRRTLDVIDGEPPPVGAEIRGCRFADRCAFAAPECRTGPVPLTEQAPGRAVR CVRADEIALSGAGATGAGATA
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=212, Percent_Identity=27.8301886792453, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI9961250, Length=221, Percent_Identity=26.2443438914027, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI4505771, Length=221, Percent_Identity=26.2443438914027, Blast_Score=66, Evalue=6e-11, Organism=Homo sapiens, GI9665248, Length=227, Percent_Identity=28.1938325991189, Blast_Score=66, Evalue=6e-11, Organism=Homo sapiens, GI171184400, Length=229, Percent_Identity=29.2576419213974, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI9961252, Length=221, Percent_Identity=26.2443438914027, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI48994883, Length=322, Percent_Identity=41.304347826087, Blast_Score=246, Evalue=2e-66, Organism=Escherichia coli, GI1789963, Length=313, Percent_Identity=39.297124600639, Blast_Score=232, Evalue=2e-62, Organism=Escherichia coli, GI1787759, Length=302, Percent_Identity=41.7218543046358, Blast_Score=232, Evalue=3e-62, Organism=Escherichia coli, GI1787500, Length=306, Percent_Identity=39.5424836601307, Blast_Score=209, Evalue=3e-55, Organism=Escherichia coli, GI145693107, Length=273, Percent_Identity=39.1941391941392, Blast_Score=194, Evalue=5e-51, Organism=Escherichia coli, GI1787548, Length=310, Percent_Identity=34.1935483870968, Blast_Score=191, Evalue=6e-50, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=38.8461538461538, Blast_Score=181, Evalue=9e-47, Organism=Escherichia coli, GI1789962, Length=301, Percent_Identity=35.2159468438538, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI1787758, Length=332, Percent_Identity=34.3373493975904, Blast_Score=168, Evalue=6e-43, Organism=Escherichia coli, GI1789890, Length=232, Percent_Identity=39.2241379310345, Blast_Score=156, Evalue=2e-39, Organism=Escherichia coli, GI1787547, Length=237, Percent_Identity=31.6455696202532, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=36.8181818181818, Blast_Score=131, Evalue=7e-32, Organism=Escherichia coli, GI48994997, Length=258, Percent_Identity=35.6589147286822, Blast_Score=128, Evalue=6e-31, Organism=Escherichia coli, GI1786398, Length=245, Percent_Identity=32.6530612244898, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789032, Length=255, Percent_Identity=32.5490196078431, Blast_Score=111, Evalue=7e-26, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=33.4763948497854, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=35.1694915254237, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=31.4285714285714, Blast_Score=104, Evalue=9e-24, Organism=Escherichia coli, GI87081834, Length=230, Percent_Identity=34.7826086956522, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788761, Length=305, Percent_Identity=29.8360655737705, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1787370, Length=283, Percent_Identity=26.1484098939929, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1787105, Length=242, Percent_Identity=33.8842975206612, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787029, Length=252, Percent_Identity=30.952380952381, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1789873, Length=228, Percent_Identity=32.0175438596491, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI87081791, Length=255, Percent_Identity=29.0196078431373, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1788644, Length=243, Percent_Identity=30.8641975308642, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=31.0924369747899, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1788450, Length=304, Percent_Identity=26.9736842105263, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=30.6976744186047, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1786698, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1789864, Length=255, Percent_Identity=26.2745098039216, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=25.4166666666667, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789672, Length=253, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI87082267, Length=238, Percent_Identity=27.7310924369748, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=29.9107142857143, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1790162, Length=244, Percent_Identity=24.1803278688525, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1787089, Length=257, Percent_Identity=28.4046692607004, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1789586, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786803, Length=237, Percent_Identity=24.4725738396624, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1790534, Length=210, Percent_Identity=29.5238095238095, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788472, Length=244, Percent_Identity=26.6393442622951, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787792, Length=275, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=29.3333333333333, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1786563, Length=218, Percent_Identity=29.8165137614679, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790739, Length=249, Percent_Identity=24.8995983935743, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788002, Length=231, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=29.5238095238095, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787112, Length=243, Percent_Identity=27.5720164609054, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=25.3393665158371, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786319, Length=226, Percent_Identity=24.7787610619469, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193209708, Length=226, Percent_Identity=33.1858407079646, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25146777, Length=236, Percent_Identity=28.3898305084746, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=29.1479820627803, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534520, Length=253, Percent_Identity=26.8774703557312, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI212646699, Length=224, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17541710, Length=234, Percent_Identity=29.4871794871795, Blast_Score=68, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=249, Percent_Identity=25.7028112449799, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=237, Percent_Identity=28.2700421940928, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI85726357, Length=263, Percent_Identity=30.0380228136882, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24641565, Length=229, Percent_Identity=30.5676855895196, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=234, Percent_Identity=25.6410256410256, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI28574533, Length=237, Percent_Identity=26.1603375527426, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI23397593, Length=227, Percent_Identity=29.5154185022026, Blast_Score=65, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36040; Mature: 35908
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEPGTGRGDPLLTVDGVRVAIGGGRTEAVHGVSFEVRRGEAVGIVGESGSGKTLVCRSV CCCCCCCCCCEEEEECCEEEEECCCCCCEEECCEEEEECCCEEEEEECCCCCCCHHHHHH LGVLAPGCAVTGGTIDFAGTSLVGLPRRTWEQLRGNRISAVFQDPASYLNPSQTVGHQLA HHHHCCCCEEECCCEEECCCCEECCCHHHHHHHCCCEEEEEECCHHHHCCCHHHHHHHHH EQLRVKVGKPRREARTAAVALFDAMGLHEPERVYHQYPHELSGGMLQRVVLAIAVSGEPE HHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCHHHHHHHHHHEEECCCCC LLVADEATTALDVTIQAEVLELLARLRRERGLAVLAVSHDLAVIAELCDRVLVFYAGELV EEEECCCCEEEEEEEHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH ETGPTAEVLDTPRHPYTEALLRVASVGDWDRRTLDVIDGEPPPVGAEIRGCRFADRCAFA CCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCC APECRTGPVPLTEQAPGRAVRCVRADEIALSGAGATGAGATA CCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCC >Mature Secondary Structure PEPGTGRGDPLLTVDGVRVAIGGGRTEAVHGVSFEVRRGEAVGIVGESGSGKTLVCRSV CCCCCCCCCEEEEECCEEEEECCCCCCEEECCEEEEECCCEEEEEECCCCCCCHHHHHH LGVLAPGCAVTGGTIDFAGTSLVGLPRRTWEQLRGNRISAVFQDPASYLNPSQTVGHQLA HHHHCCCCEEECCCEEECCCCEECCCHHHHHHHCCCEEEEEECCHHHHCCCHHHHHHHHH EQLRVKVGKPRREARTAAVALFDAMGLHEPERVYHQYPHELSGGMLQRVVLAIAVSGEPE HHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCHHHHHHHHHHEEECCCCC LLVADEATTALDVTIQAEVLELLARLRRERGLAVLAVSHDLAVIAELCDRVLVFYAGELV EEEECCCCEEEEEEEHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH ETGPTAEVLDTPRHPYTEALLRVASVGDWDRRTLDVIDGEPPPVGAEIRGCRFADRCAFA CCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCC APECRTGPVPLTEQAPGRAVRCVRADEIALSGAGATGAGATA CCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]