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The map label for this gene is yliC [C]

Identifier: 158314341

GI number: 158314341

Start: 2990115

End: 2991155

Strand: Direct

Name: yliC [C]

Synonym: Franean1_2511

Alternate gene names: 158314341

Gene position: 2990115-2991155 (Clockwise)

Preceding gene: 158314340

Following gene: 158314342

Centisome position: 33.29

GC content: 70.8

Gene sequence:

>1041_bases
ATGACGACACTCGAGATCAGCCCGGCGGTCGAGCCGGCCGGCGCGGCGGCTGACGCCCCGGCCGGCCGGCGGGCCGGTTG
GGGCAGGGCGTTCGTGCGGCCGCTGCGCAGTGCGCTGTCGGTCGGCATCCCGGTAGTGCTGCTCTCCACCTTCATCACCT
ACGCGATGGGGGCCCTCACCGACACCAACCCGGCGGCGCAGGTGCTCGGCGAGACCGCGACACCGGCGGACATCGACCGG
ATGAACCACTACTTCGGGCTCGACCGACCGCTGCTCGTCCAGTACTTCAGCTGGCTCGGCCACGCCCTCACCGGCGACCT
CGGACGGTCCTACTTCACCACGCTCCCGGTCACCGACAGCATCACCCAGGCCCTGCCGGTGAACCTGTCGATCGCGATCC
TCTCGGTGCTGCTCGCCGTCCTGATCGGCGGCGGGCTCGGCATCGGGGCGGCGCTCTCGTCCGGCGGCTGGTTCGACCGG
GCGGTCACCATGCTGTGCTCGGCCGTGGCCACCGTGCCGCCGTTCGTCATCGGAATCGGGCTGATCGTGCTGTTCTCGGT
GACAGTCCCGATCCTTCCCTCCGGTGGCTACGTGCCGTTCACCGAGGATCCGGGCCAGTGGCTGCGGTTCGCCATCCTGC
CGTCGTTCGCGCTCTCGGTGGAGGCTGCCGCGGGCCTCGCCCGCCAGCTGCGCACCTCCCTCGTCGGGGAGCTGCGGGCG
AACTACATCACCGGGGCGGACGTCCGCGGGCTGACGAGGCGACGGGTCGTCTTCGGGCACGCCCTGCGTAACGCCGCCGG
CCCGGCGCTCACCCTGCTGGGCTACTTCATCCCGCAGCTCATCGGGGCCATGGTCGTCGCCGAGGCCGTCTTCAACCTCC
CGGGCCTGGGGAAGCTCGGGCTGGACGCGGCGAGCAAGGGCGACATCCCGGTGATCCAGGGCGTGCTGGTCACCATGATC
GGGCTCGTCGTGGTCTGCAACCTCCTGGTGAACGCCGCGCTGCTGCGCCTGACACCGCACGCGAAGAGGCAGGAACAATG
A

Upstream 100 bases:

>100_bases
CGCAAGAAGAACGTCTCGGAGCTGGGCAGCTACCTGGCGGTACAGCGCTTCGAGGGCGTCCGGGTCGGGTAATGCCAGCC
ACCGACGGTGAGGGCTCCAG

Downstream 100 bases:

>100_bases
CGCGGAAGGCAGCGGGCCCGTTGCGGCGGGCCGTGCGGCTGCGGTCCACGAAGATCGCCCTGGTGATCCTCGGTGTGGTC
GCCGTACTCGGGTTCGTCGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MTTLEISPAVEPAGAAADAPAGRRAGWGRAFVRPLRSALSVGIPVVLLSTFITYAMGALTDTNPAAQVLGETATPADIDR
MNHYFGLDRPLLVQYFSWLGHALTGDLGRSYFTTLPVTDSITQALPVNLSIAILSVLLAVLIGGGLGIGAALSSGGWFDR
AVTMLCSAVATVPPFVIGIGLIVLFSVTVPILPSGGYVPFTEDPGQWLRFAILPSFALSVEAAAGLARQLRTSLVGELRA
NYITGADVRGLTRRRVVFGHALRNAAGPALTLLGYFIPQLIGAMVVAEAVFNLPGLGKLGLDAASKGDIPVIQGVLVTMI
GLVVVCNLLVNAALLRLTPHAKRQEQ

Sequences:

>Translated_346_residues
MTTLEISPAVEPAGAAADAPAGRRAGWGRAFVRPLRSALSVGIPVVLLSTFITYAMGALTDTNPAAQVLGETATPADIDR
MNHYFGLDRPLLVQYFSWLGHALTGDLGRSYFTTLPVTDSITQALPVNLSIAILSVLLAVLIGGGLGIGAALSSGGWFDR
AVTMLCSAVATVPPFVIGIGLIVLFSVTVPILPSGGYVPFTEDPGQWLRFAILPSFALSVEAAAGLARQLRTSLVGELRA
NYITGADVRGLTRRRVVFGHALRNAAGPALTLLGYFIPQLIGAMVVAEAVFNLPGLGKLGLDAASKGDIPVIQGVLVTMI
GLVVVCNLLVNAALLRLTPHAKRQEQ
>Mature_345_residues
TTLEISPAVEPAGAAADAPAGRRAGWGRAFVRPLRSALSVGIPVVLLSTFITYAMGALTDTNPAAQVLGETATPADIDRM
NHYFGLDRPLLVQYFSWLGHALTGDLGRSYFTTLPVTDSITQALPVNLSIAILSVLLAVLIGGGLGIGAALSSGGWFDRA
VTMLCSAVATVPPFVIGIGLIVLFSVTVPILPSGGYVPFTEDPGQWLRFAILPSFALSVEAAAGLARQLRTSLVGELRAN
YITGADVRGLTRRRVVFGHALRNAAGPALTLLGYFIPQLIGAMVVAEAVFNLPGLGKLGLDAASKGDIPVIQGVLVTMIG
LVVVCNLLVNAALLRLTPHAKRQEQ

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789888, Length=306, Percent_Identity=33.9869281045752, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787053, Length=302, Percent_Identity=31.4569536423841, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1789965, Length=327, Percent_Identity=28.4403669724771, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=29.5819935691318, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1787761, Length=289, Percent_Identity=31.1418685121107, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788504, Length=283, Percent_Identity=28.6219081272085, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787550, Length=255, Percent_Identity=23.921568627451, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36127; Mature: 35996

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLEISPAVEPAGAAADAPAGRRAGWGRAFVRPLRSALSVGIPVVLLSTFITYAMGALT
CCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
DTNPAAQVLGETATPADIDRMNHYFGLDRPLLVQYFSWLGHALTGDLGRSYFTTLPVTDS
CCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHEECCCCHH
ITQALPVNLSIAILSVLLAVLIGGGLGIGAALSSGGWFDRAVTMLCSAVATVPPFVIGIG
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LIVLFSVTVPILPSGGYVPFTEDPGQWLRFAILPSFALSVEAAAGLARQLRTSLVGELRA
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NYITGADVRGLTRRRVVFGHALRNAAGPALTLLGYFIPQLIGAMVVAEAVFNLPGLGKLG
HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LDAASKGDIPVIQGVLVTMIGLVVVCNLLVNAALLRLTPHAKRQEQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure 
TTLEISPAVEPAGAAADAPAGRRAGWGRAFVRPLRSALSVGIPVVLLSTFITYAMGALT
CEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
DTNPAAQVLGETATPADIDRMNHYFGLDRPLLVQYFSWLGHALTGDLGRSYFTTLPVTDS
CCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHEECCCCHH
ITQALPVNLSIAILSVLLAVLIGGGLGIGAALSSGGWFDRAVTMLCSAVATVPPFVIGIG
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LIVLFSVTVPILPSGGYVPFTEDPGQWLRFAILPSFALSVEAAAGLARQLRTSLVGELRA
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NYITGADVRGLTRRRVVFGHALRNAAGPALTLLGYFIPQLIGAMVVAEAVFNLPGLGKLG
HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LDAASKGDIPVIQGVLVTMIGLVVVCNLLVNAALLRLTPHAKRQEQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]