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The map label for this gene is ycdM [C]

Identifier: 158314146

GI number: 158314146

Start: 2764005

End: 2765090

Strand: Direct

Name: ycdM [C]

Synonym: Franean1_2314

Alternate gene names: 158314146

Gene position: 2764005-2765090 (Clockwise)

Preceding gene: 158314143

Following gene: 158314151

Centisome position: 30.77

GC content: 70.44

Gene sequence:

>1086_bases
ATGAGGTTTCTGGCGATCACCTTGATCGTCCACGCGCCCGACCCGCTGACCGGGGTGCGCCGGTCGACCACGGCCTGGCT
CCACGAGGTGGTCGACAACGCGGTGCTGGCCGAGGAGCTGGGGTTTGACGGCTTCGGGGTGGGTGAGCGGCACGAGCGGC
CGTTCATCTCCTCGTCGCCGCCGGTGGTGCTCAGCCACATCGCGGCCCGCACGGCCAGGATCAGGCTGTTCACCGCCGTC
ACGACGCTGAGCCTTCTCGACCCGGTGCGGGCCTACGAGGACTACGCCACCCTCGACCAGCTGTCCGGGGGGCGGCTGGA
GCTGATGGTCGGCAAGGGCAACGGCGCCGCGCAGGCAGAGCTGTTCCACGTCACCGCGGCGGACCAGTGGGACCGCAACC
GCGAGTCCTACGAACTGTTCCGCCGGCTGTGGCGGGAGGACAAGGTCACCTGGTCCGGCCGGTTCCGCCCGCCACTGGAG
GAGGCCGAGACCTGGCCGCGCCCGCTGCAGCCGGAGATCCGGATCTGGCACGGCAGCGCGACCAGCGAGGCGTCGGTGGA
CCTCGCGGCCCGGTACGGCGACCCGTTGTTCTCCGCGAACGTGACCAATCCGGTCGAGCCGTACGCGGAGCTGGTCCGCT
ACTACCGGGAGCGCTGGGTGGCCTACGGGCGCGACCCGGCCGACATCCTCGTGGGCGCCGGAACCGCCGGTTACTACAGT
GCTCGCTGCTCCCAGGACGCCGTCGCGCGCTACCGGCCGATCTTCGACGCCCGGACGGCGATGTTCCGGAAGATGGGCCT
GGAGCCGGTCTTCCCGACCCTTGAGGACGCGATCGAACGCAGCTCGATCCTCGTGGGCAGCCCGCAGCAGATCATCGAGA
AGGTCCACTGGTACCACGAGCGGCTCGGCCATGAGGTGATGCACCTGCACGCCGACGCGGACGGCCTCAGCCCGAAGGAG
CACCGCGAGACGATGGAGCTCTTCCAGAGCGACATCGCCCCGGTGCTACGCAGGGAGATCCCGAGCCGTCCCTTCCCCAC
CCCGCCGCCGCTTCCCTCCGACGTCCTCCCCGACGCCCCGGAGTGA

Upstream 100 bases:

>100_bases
TTAATGGTTTTAGGTCTGGTTCGCCCGGTGTCTCAACGTCATGGGAGATACCTGCCCAGCCGCCGGACCGCTGGCCACGC
GGGGACTGGAGGAACGACGC

Downstream 100 bases:

>100_bases
CGGCGGAGTCGATCAACCCTCGGTATGTATCCAGGTGGCGGCCGACAGGGTCCGCGTCGAGGGGCCGTCGGGGTCGTTGT
CGGGCCGGTTGCCGCGGCTG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MRFLAITLIVHAPDPLTGVRRSTTAWLHEVVDNAVLAEELGFDGFGVGERHERPFISSSPPVVLSHIAARTARIRLFTAV
TTLSLLDPVRAYEDYATLDQLSGGRLELMVGKGNGAAQAELFHVTAADQWDRNRESYELFRRLWREDKVTWSGRFRPPLE
EAETWPRPLQPEIRIWHGSATSEASVDLAARYGDPLFSANVTNPVEPYAELVRYYRERWVAYGRDPADILVGAGTAGYYS
ARCSQDAVARYRPIFDARTAMFRKMGLEPVFPTLEDAIERSSILVGSPQQIIEKVHWYHERLGHEVMHLHADADGLSPKE
HRETMELFQSDIAPVLRREIPSRPFPTPPPLPSDVLPDAPE

Sequences:

>Translated_361_residues
MRFLAITLIVHAPDPLTGVRRSTTAWLHEVVDNAVLAEELGFDGFGVGERHERPFISSSPPVVLSHIAARTARIRLFTAV
TTLSLLDPVRAYEDYATLDQLSGGRLELMVGKGNGAAQAELFHVTAADQWDRNRESYELFRRLWREDKVTWSGRFRPPLE
EAETWPRPLQPEIRIWHGSATSEASVDLAARYGDPLFSANVTNPVEPYAELVRYYRERWVAYGRDPADILVGAGTAGYYS
ARCSQDAVARYRPIFDARTAMFRKMGLEPVFPTLEDAIERSSILVGSPQQIIEKVHWYHERLGHEVMHLHADADGLSPKE
HRETMELFQSDIAPVLRREIPSRPFPTPPPLPSDVLPDAPE
>Mature_361_residues
MRFLAITLIVHAPDPLTGVRRSTTAWLHEVVDNAVLAEELGFDGFGVGERHERPFISSSPPVVLSHIAARTARIRLFTAV
TTLSLLDPVRAYEDYATLDQLSGGRLELMVGKGNGAAQAELFHVTAADQWDRNRESYELFRRLWREDKVTWSGRFRPPLE
EAETWPRPLQPEIRIWHGSATSEASVDLAARYGDPLFSANVTNPVEPYAELVRYYRERWVAYGRDPADILVGAGTAGYYS
ARCSQDAVARYRPIFDARTAMFRKMGLEPVFPTLEDAIERSSILVGSPQQIIEKVHWYHERLGHEVMHLHADADGLSPKE
HRETMELFQSDIAPVLRREIPSRPFPTPPPLPSDVLPDAPE

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 40756; Mature: 40756

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLAITLIVHAPDPLTGVRRSTTAWLHEVVDNAVLAEELGFDGFGVGERHERPFISSSP
CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PVVLSHIAARTARIRLFTAVTTLSLLDPVRAYEDYATLDQLSGGRLELMVGKGNGAAQAE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEE
LFHVTAADQWDRNRESYELFRRLWREDKVTWSGRFRPPLEEAETWPRPLQPEIRIWHGSA
EEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCCCCCCCEEEEECCC
TSEASVDLAARYGDPLFSANVTNPVEPYAELVRYYRERWVAYGRDPADILVGAGTAGYYS
CCCCHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCHHH
ARCSQDAVARYRPIFDARTAMFRKMGLEPVFPTLEDAIERSSILVGSPQQIIEKVHWYHE
HHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCHHHHHHHHHHHHH
RLGHEVMHLHADADGLSPKEHRETMELFQSDIAPVLRREIPSRPFPTPPPLPSDVLPDAP
HHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
E
C
>Mature Secondary Structure
MRFLAITLIVHAPDPLTGVRRSTTAWLHEVVDNAVLAEELGFDGFGVGERHERPFISSSP
CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PVVLSHIAARTARIRLFTAVTTLSLLDPVRAYEDYATLDQLSGGRLELMVGKGNGAAQAE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEE
LFHVTAADQWDRNRESYELFRRLWREDKVTWSGRFRPPLEEAETWPRPLQPEIRIWHGSA
EEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCCCCCCCEEEEECCC
TSEASVDLAARYGDPLFSANVTNPVEPYAELVRYYRERWVAYGRDPADILVGAGTAGYYS
CCCCHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCHHH
ARCSQDAVARYRPIFDARTAMFRKMGLEPVFPTLEDAIERSSILVGSPQQIIEKVHWYHE
HHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCHHHHHHHHHHHHH
RLGHEVMHLHADADGLSPKEHRETMELFQSDIAPVLRREIPSRPFPTPPPLPSDVLPDAP
HHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]