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The map label for this gene is ydcM [C]

Identifier: 158314130

GI number: 158314130

Start: 2747209

End: 2747787

Strand: Direct

Name: ydcM [C]

Synonym: Franean1_2297

Alternate gene names: 158314130

Gene position: 2747209-2747787 (Clockwise)

Preceding gene: 158314129

Following gene: 158314131

Centisome position: 30.59

GC content: 68.39

Gene sequence:

>579_bases
GTGATCGTGGTCGAGGATCTGCATGTCGCCGGGATGGTCCGTAACCGCCGTCTCGCCCGCGCGGTCTCGGACACCGCGAT
GGCCGAGATCCGGCGCCAACTCACCTACAAGACCCTCTGGTACGGCTCGCGTCTCGTCGTCGCGGACCGCTGGTATCCGT
TTTCGAAGACCTGTTCCGGCTGTGGCTGGCGAAACCCAAGCCTCACTCTGTCGGACCGTACCTTCGCCTGCCAGTCCTGC
GGGCTGGTGATCGACCGCGACGTGAACGCCGCGGTCAACCTGCGCAACCTCGTCGCCGCCAGTACGTCGGAGACGGAAAA
CGCCCGTGGAGCCGACCGTAGGACCCAGCTTGCTGGGCGGGTGGCTGGGAAGCGGGAACCCGGCACCGTGGGCATGACCC
CGTGCGAGCGGGTCAGACCGGGGGTGCCTCACCGAGAGGCGAGGCGGCATGACCAGGCGCTACCAGGCGTTACCAGGCGC
TCACATGCAACGGTGCGGTTAGCCCCCGGACGAACTGACGGGCCAGCTCCGTCGCCGGGCCCGGCACCGGCGATCTACCG
TCGGCACGGACGGTCCTGA

Upstream 100 bases:

>100_bases
CCAGCGCGCTGCCGAACTGGGCCGCCTGCACGCCCACGTCGCCCACCAGCGGCGCGACGGGCTGCACAAGCTCACCACCC
GGCTCACGAAGAACCACGAT

Downstream 100 bases:

>100_bases
CCCGTCGTCGGGCCCGGGCCCGACGGGCGGACGCGGCAGCGGACGGAGCAAAGGTGAGCGAGGTGCAGGTTGGCGCGTCG
GCGGCACCAACGCCGGATGG

Product: transposase IS605 OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MIVVEDLHVAGMVRNRRLARAVSDTAMAEIRRQLTYKTLWYGSRLVVADRWYPFSKTCSGCGWRNPSLTLSDRTFACQSC
GLVIDRDVNAAVNLRNLVAASTSETENARGADRRTQLAGRVAGKREPGTVGMTPCERVRPGVPHREARRHDQALPGVTRR
SHATVRLAPGRTDGPAPSPGPAPAIYRRHGRS

Sequences:

>Translated_192_residues
MIVVEDLHVAGMVRNRRLARAVSDTAMAEIRRQLTYKTLWYGSRLVVADRWYPFSKTCSGCGWRNPSLTLSDRTFACQSC
GLVIDRDVNAAVNLRNLVAASTSETENARGADRRTQLAGRVAGKREPGTVGMTPCERVRPGVPHREARRHDQALPGVTRR
SHATVRLAPGRTDGPAPSPGPAPAIYRRHGRS
>Mature_192_residues
MIVVEDLHVAGMVRNRRLARAVSDTAMAEIRRQLTYKTLWYGSRLVVADRWYPFSKTCSGCGWRNPSLTLSDRTFACQSC
GLVIDRDVNAAVNLRNLVAASTSETENARGADRRTQLAGRVAGKREPGTVGMTPCERVRPGVPHREARRHDQALPGVTRR
SHATVRLAPGRTDGPAPSPGPAPAIYRRHGRS

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=115, Percent_Identity=38.2608695652174, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 21109; Mature: 21109

Theoretical pI: Translated: 11.64; Mature: 11.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVVEDLHVAGMVRNRRLARAVSDTAMAEIRRQLTYKTLWYGSRLVVADRWYPFSKTCSG
CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCHHCCCC
CGWRNPSLTLSDRTFACQSCGLVIDRDVNAAVNLRNLVAASTSETENARGADRRTQLAGR
CCCCCCCEEECCCCEEHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
VAGKREPGTVGMTPCERVRPGVPHREARRHDQALPGVTRRSHATVRLAPGRTDGPAPSPG
HCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCC
PAPAIYRRHGRS
CCCHHHHHCCCC
>Mature Secondary Structure
MIVVEDLHVAGMVRNRRLARAVSDTAMAEIRRQLTYKTLWYGSRLVVADRWYPFSKTCSG
CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCHHCCCC
CGWRNPSLTLSDRTFACQSCGLVIDRDVNAAVNLRNLVAASTSETENARGADRRTQLAGR
CCCCCCCEEECCCCEEHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
VAGKREPGTVGMTPCERVRPGVPHREARRHDQALPGVTRRSHATVRLAPGRTDGPAPSPG
HCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCC
PAPAIYRRHGRS
CCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]