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The map label for this gene is ydeP [H]

Identifier: 158314088

GI number: 158314088

Start: 2694845

End: 2695315

Strand: Direct

Name: ydeP [H]

Synonym: Franean1_2255

Alternate gene names: 158314088

Gene position: 2694845-2695315 (Clockwise)

Preceding gene: 158314086

Following gene: 158314090

Centisome position: 30.0

GC content: 70.91

Gene sequence:

>471_bases
ATGTCCCAGCGGCACACGGATGTGACCGTGGAACGGCCTCCGTCAGCGCGGCCTCCGTCGTCGCAGCCGTCGCCGGCCGA
GACCTGCGGCGAGCTCGCCCCGCCGATCGTCGAGGCCTGCCCGATCATGGAGGTCCTCGACCAGGTCAGCGGCAAGTGGA
GCATCGGAATCCTGGTCGCGGCCGCCCACGGGCCGGTTCGCTTCACCGAGCTGGAACGCACCGTCAACGGCATCAGCCGG
CGGATGCTGACCCTCACCCTGCGTCGGCTCGAACGCGACGGCCTGCTCGTCCGGAAGGTCTACCCGACCGTCCCGCCGAA
GGTGGAGTACACGGCGACGAGCGCCGCCCGCGAGCTGTTCGGCCCGCTGACCGCGCTCACCGAATGGGCGGAACGCCACC
GGACGACCATCGCCCGGGCCCGCCACGCCTACGACCTGGAGAATGCCGAGAAAAAGTCCCCCGCGGGCTGA

Upstream 100 bases:

>100_bases
CTTGGGGCATCTTTTGTTACGGACCCCACGGGATGTTCTGGGGATCATGTTCTGTGACCATGCTGCGGGAGCGGCCGGAC
CAGGGGAAGAAGGCACTTTC

Downstream 100 bases:

>100_bases
GGCGGCGTTTCCCCAGGTCCGCGCCACGGACCGGGATCCCGCCACGAACGGGGCAACCCGATGAGCCGCCATATCCAGGT
CACCTTCGACGCTCACGACC

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSQRHTDVTVERPPSARPPSSQPSPAETCGELAPPIVEACPIMEVLDQVSGKWSIGILVAAAHGPVRFTELERTVNGISR
RMLTLTLRRLERDGLLVRKVYPTVPPKVEYTATSAARELFGPLTALTEWAERHRTTIARARHAYDLENAEKKSPAG

Sequences:

>Translated_156_residues
MSQRHTDVTVERPPSARPPSSQPSPAETCGELAPPIVEACPIMEVLDQVSGKWSIGILVAAAHGPVRFTELERTVNGISR
RMLTLTLRRLERDGLLVRKVYPTVPPKVEYTATSAARELFGPLTALTEWAERHRTTIARARHAYDLENAEKKSPAG
>Mature_155_residues
SQRHTDVTVERPPSARPPSSQPSPAETCGELAPPIVEACPIMEVLDQVSGKWSIGILVAAAHGPVRFTELERTVNGISRR
MLTLTLRRLERDGLLVRKVYPTVPPKVEYTATSAARELFGPLTALTEWAERHRTTIARARHAYDLENAEKKSPAG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=94, Percent_Identity=43.6170212765958, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 17204; Mature: 17073

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRHTDVTVERPPSARPPSSQPSPAETCGELAPPIVEACPIMEVLDQVSGKWSIGILVA
CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHCCHHHHHHHHCCCEEEEEEEE
AAHGPVRFTELERTVNGISRRMLTLTLRRLERDGLLVRKVYPTVPPKVEYTATSAARELF
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEHHHHHHHHHH
GPLTALTEWAERHRTTIARARHAYDLENAEKKSPAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SQRHTDVTVERPPSARPPSSQPSPAETCGELAPPIVEACPIMEVLDQVSGKWSIGILVA
CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHCCHHHHHHHHCCCEEEEEEEE
AAHGPVRFTELERTVNGISRRMLTLTLRRLERDGLLVRKVYPTVPPKVEYTATSAARELF
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEHHHHHHHHHH
GPLTALTEWAERHRTTIARARHAYDLENAEKKSPAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]