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The map label for this gene is ydcM [C]

Identifier: 158314033

GI number: 158314033

Start: 2632882

End: 2633286

Strand: Direct

Name: ydcM [C]

Synonym: Franean1_2200

Alternate gene names: 158314033

Gene position: 2632882-2633286 (Clockwise)

Preceding gene: 158314032

Following gene: 158314034

Centisome position: 29.31

GC content: 69.38

Gene sequence:

>405_bases
ATGGTGCGTCACCGGCGGCTGGCTCGTGCGGTCTCCGACGCGGGGATGGCCGAGATCCGCCGCCAGCTCGCCTACAAGAC
CGGCTGGTACGGATCGAGACTGGTCACTGCCGGCCGCTGGTATCCGAGTTCGAAGACCTGTTCCGGTTGTGGCTGGCGAA
ACCCAAACCTGACACTGTCGGAGCGCACCTTCTCCTGCCAGCCCTGCGGGCTGGTGCTCGACCGTGACGTGAACGCCGCG
GTCAACCTGCGTCACCTCGTCGCCGGCAGTGCGTCGGAGACGGAAAACGCCCGTGGAGCCGACCGTAGGACCCACTGCGG
TGGGCGGGTGGCTGTGAAACGGGAACCCGGCACGGCCTCGGCCGGTCAGACCGGGAGCGCCGCCCCGCCAGGGACGGCAG
GCTGA

Upstream 100 bases:

>100_bases
CGGCGCTGGCCCGGCATGCCGGGGCTGCCCGGTTTGCCTTCAACTGGGGCTTGTCGCGGGTGAAGGCGGCGTTGTCGCAG
CGGGAGGCGGAGTTGCGGGG

Downstream 100 bases:

>100_bases
CCGGTGAGCGCCAAAACACACCGGACGCAACGGCTGGAAGACTGCTCAGACATGTGCGGCAGGTATACCCAGACTCTGAG
CGCCGACGATCTCGCCGCGG

Product: transposase IS605 OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MVRHRRLARAVSDAGMAEIRRQLAYKTGWYGSRLVTAGRWYPSSKTCSGCGWRNPNLTLSERTFSCQPCGLVLDRDVNAA
VNLRHLVAGSASETENARGADRRTHCGGRVAVKREPGTASAGQTGSAAPPGTAG

Sequences:

>Translated_134_residues
MVRHRRLARAVSDAGMAEIRRQLAYKTGWYGSRLVTAGRWYPSSKTCSGCGWRNPNLTLSERTFSCQPCGLVLDRDVNAA
VNLRHLVAGSASETENARGADRRTHCGGRVAVKREPGTASAGQTGSAAPPGTAG
>Mature_134_residues
MVRHRRLARAVSDAGMAEIRRQLAYKTGWYGSRLVTAGRWYPSSKTCSGCGWRNPNLTLSERTFSCQPCGLVLDRDVNAA
VNLRHLVAGSASETENARGADRRTHCGGRVAVKREPGTASAGQTGSAAPPGTAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 14271; Mature: 14271

Theoretical pI: Translated: 11.00; Mature: 11.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRHRRLARAVSDAGMAEIRRQLAYKTGWYGSRLVTAGRWYPSSKTCSGCGWRNPNLTLS
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
ERTFSCQPCGLVLDRDVNAAVNLRHLVAGSASETENARGADRRTHCGGRVAVKREPGTAS
CCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
AGQTGSAAPPGTAG
CCCCCCCCCCCCCC
>Mature Secondary Structure
MVRHRRLARAVSDAGMAEIRRQLAYKTGWYGSRLVTAGRWYPSSKTCSGCGWRNPNLTLS
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
ERTFSCQPCGLVLDRDVNAAVNLRHLVAGSASETENARGADRRTHCGGRVAVKREPGTAS
CCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
AGQTGSAAPPGTAG
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]