Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 158313925

GI number: 158313925

Start: 2515804

End: 2516259

Strand: Direct

Name: nifU [H]

Synonym: Franean1_2090

Alternate gene names: 158313925

Gene position: 2515804-2516259 (Clockwise)

Preceding gene: 158313924

Following gene: 158313926

Centisome position: 28.01

GC content: 68.64

Gene sequence:

>456_bases
GTGAAGCTCGACTCCATGTACCAGGAGATCATCCTGGACCACTACCGCAACCCGCACCACCGCGGCCTGCGCGACCCGTT
CGATGCCGAGGTGCACCACGTCAACCCGACCTGCGGCGACGAGGTGACCCTGCGGGTCAAGGTCGCCGACGGTGTCGTCT
CGGACGTGTCCTACGAGAGCGAGGGCTGCTCGATCAGCCAGGCGTCGGCCAGCGTGATGGCCGACCTGGTGATCGGGAAG
TCGGTGGCGGACGCGCTCGAGCTCGAACGCGAGTTCCTGGCGCTGATGCAGTCCCGCGGCACCCAGGAGGGCGACGAGGA
GGTGCTCGAGGACGCGGTCGCGTTCGCGGGCGTCTCCAAGTACCCGGCCCGGGTGAAGTGCGCACTGCTGTCCTGGATGG
CCTGGAAGGACGCCACCGCGCAGGCCACCGCCGTCGTCCCGGAGCAGGAGAAGTGA

Upstream 100 bases:

>100_bases
TGCCGGCGACCACCCGGGCCTCGTTCCACCTGTACACGAACACCGCCGACGTCGACGCGTTGGTGGAAGGTCTCGGGCAG
GTCAGGAGGTTCTTCCTGAA

Downstream 100 bases:

>100_bases
CCATGAGCGAGACCGCCACCCCCATCCAGACGGAGAGGGCTGTCGTCGTGGAGAAGGCATCGTTCGACGACGTCGAGGAG
GCCATGCGCGACGTCGTTGA

Product: NifU family SUF system FeS assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MKLDSMYQEIILDHYRNPHHRGLRDPFDAEVHHVNPTCGDEVTLRVKVADGVVSDVSYESEGCSISQASASVMADLVIGK
SVADALELEREFLALMQSRGTQEGDEEVLEDAVAFAGVSKYPARVKCALLSWMAWKDATAQATAVVPEQEK

Sequences:

>Translated_151_residues
MKLDSMYQEIILDHYRNPHHRGLRDPFDAEVHHVNPTCGDEVTLRVKVADGVVSDVSYESEGCSISQASASVMADLVIGK
SVADALELEREFLALMQSRGTQEGDEEVLEDAVAFAGVSKYPARVKCALLSWMAWKDATAQATAVVPEQEK
>Mature_151_residues
MKLDSMYQEIILDHYRNPHHRGLRDPFDAEVHHVNPTCGDEVTLRVKVADGVVSDVSYESEGCSISQASASVMADLVIGK
SVADALELEREFLALMQSRGTQEGDEEVLEDAVAFAGVSKYPARVKCALLSWMAWKDATAQATAVVPEQEK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16580; Mature: 16580

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDSMYQEIILDHYRNPHHRGLRDPFDAEVHHVNPTCGDEVTLRVKVADGVVSDVSYES
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCHHHHCCCCC
EGCSISQASASVMADLVIGKSVADALELEREFLALMQSRGTQEGDEEVLEDAVAFAGVSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
YPARVKCALLSWMAWKDATAQATAVVPEQEK
CCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
>Mature Secondary Structure
MKLDSMYQEIILDHYRNPHHRGLRDPFDAEVHHVNPTCGDEVTLRVKVADGVVSDVSYES
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCHHHHCCCCC
EGCSISQASASVMADLVIGKSVADALELEREFLALMQSRGTQEGDEEVLEDAVAFAGVSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
YPARVKCALLSWMAWKDATAQATAVVPEQEK
CCHHHHHHHHHHHHHCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]