| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313887
Identifier: 158313887
GI number: 158313887
Start: 2471848
End: 2473143
Strand: Direct
Name: 158313887
Synonym: Franean1_2052
Alternate gene names: NA
Gene position: 2471848-2473143 (Clockwise)
Preceding gene: 158313884
Following gene: 158313888
Centisome position: 27.52
GC content: 77.47
Gene sequence:
>1296_bases ATGTCCACGAAGGACGGCTCCCGCCCCACGGCGCTGCCGCCGATCGCAGTGCGCCCAGGCCTGTTCGTGTCCGTGGCGGT CGTGACAGTGCTGCTCGGCGCGCTCACCCTCCCCGCCACCGTGCCGGGCCGTCCGGGCTTCGCCTACTTCAGCGGGGGCG TGCTCGGCGCGGGTCTGCTCGTCGCGATCCTGCTCGGGGCCGACCTGGCCCGGGCCGCCGCCGCGCGCAGGGCCGGGATC ACGGTCACCGGGATCACCCTCGGCGCCTTCGGGAGCCGGCTGGGCCTCGCACCCGCACGCGACCGCTCGACGGACCGGGG TGACGGCAGCCCGCTGAGCGGTACCGGCCCGTCGGGCGGTAGCGCCCCGTTGGGCGGTACCGGCCCGGCCGGTTCCGATG ACCCGCTCGCCCCGGCCACCGGTGACGCACTCGCCGACGCCGCCGTCGCCCGTGCGGGCCTGATGGTGACGGCCCTCGCC GGGATGGTGCTGGTCGCCGCCGGCGCGTTCGCCCCCGGCGGAACGCTCGCCCTGGTCGGCGAGCTGGCGCTCTGGGTCGG CACGTTCGCCCTGCTCATCACCGTCGTCGACCTGCTGCCCGCACCGCGCAGCGCCGGCGGGCGGATCCTCGCCGCCCGGG TCCTGCGCCGCACCGGTGACGAGGCGGCCGCGGGCGCGGCCGTGGCCCGCGCGGGTGTCATCACCGGGTGGACCCTGATC GTCTTCGGTGCGGCGGCCACCTTCCTGGTCGGGCTGGTCGGCCTGTGGGCGATTCTCCTCGGCTGGCTCGCGCTCGGGAC GTCCCGGCTCGCGCAGACGCAGGAGCGCACCTCCGCCGCGCTGCGCGGGGTCTTCGTCCGTGACGTGATGATCCCCGCCC CGGAGGCGCTGCCGTCCTGGAAGACAGTCGCCGCCGCGCTGGACGAGACCGTGCTCCCGTCCCGCGCCTCGGTGTTCGGG GTCCGGGACTTCGCCGGGCCGCTGATCGGCGTCACCCTGCTGCGTGATCTGGCCGCGGTGCCCGCGGACGACCGCGACCT GGCCCGGGTGGCCCGGGTGACCATCCCGCTGGACCGGGTCGCCACCGCCCGTCCGGAGGAGCCGCTCGCCGCGGTCGCGT CGCGGCTGGCGCACCGGCCCGCCGCGGGCGTGATCGTCGTCGTCGCCGACGGCCCGGATGGCCTGCCCGGGATGGTGGGC ACCGTGGGCCCGGGCGAACTGGCCCGGGCGCTGGAGACCACGCCGCTGCACGGCCGGGTGGTCATCCCGACCGGCTTCGG CCGCCGCCGCCGGTGA
Upstream 100 bases:
>100_bases CCCGGCGCCGCGATCATCGCCCAGCCCAGGTGCCACCACGGCAACACAAAGCCCCCGACGGAAGTGACTGACGGTGAAAG GCAAAGGATCTACCCGAGAC
Downstream 100 bases:
>100_bases GCTCACCGGTCGCGCCGAGAGCCCGGTCCCGCCGGGTTCCCGGCGGACGTCCCCGCCGTCGCCGGGCCTGAGCGGCCCCC TCGGCGCGCGGGCCCGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MSTKDGSRPTALPPIAVRPGLFVSVAVVTVLLGALTLPATVPGRPGFAYFSGGVLGAGLLVAILLGADLARAAAARRAGI TVTGITLGAFGSRLGLAPARDRSTDRGDGSPLSGTGPSGGSAPLGGTGPAGSDDPLAPATGDALADAAVARAGLMVTALA GMVLVAAGAFAPGGTLALVGELALWVGTFALLITVVDLLPAPRSAGGRILAARVLRRTGDEAAAGAAVARAGVITGWTLI VFGAAATFLVGLVGLWAILLGWLALGTSRLAQTQERTSAALRGVFVRDVMIPAPEALPSWKTVAAALDETVLPSRASVFG VRDFAGPLIGVTLLRDLAAVPADDRDLARVARVTIPLDRVATARPEEPLAAVASRLAHRPAAGVIVVVADGPDGLPGMVG TVGPGELARALETTPLHGRVVIPTGFGRRRR
Sequences:
>Translated_431_residues MSTKDGSRPTALPPIAVRPGLFVSVAVVTVLLGALTLPATVPGRPGFAYFSGGVLGAGLLVAILLGADLARAAAARRAGI TVTGITLGAFGSRLGLAPARDRSTDRGDGSPLSGTGPSGGSAPLGGTGPAGSDDPLAPATGDALADAAVARAGLMVTALA GMVLVAAGAFAPGGTLALVGELALWVGTFALLITVVDLLPAPRSAGGRILAARVLRRTGDEAAAGAAVARAGVITGWTLI VFGAAATFLVGLVGLWAILLGWLALGTSRLAQTQERTSAALRGVFVRDVMIPAPEALPSWKTVAAALDETVLPSRASVFG VRDFAGPLIGVTLLRDLAAVPADDRDLARVARVTIPLDRVATARPEEPLAAVASRLAHRPAAGVIVVVADGPDGLPGMVG TVGPGELARALETTPLHGRVVIPTGFGRRRR >Mature_430_residues STKDGSRPTALPPIAVRPGLFVSVAVVTVLLGALTLPATVPGRPGFAYFSGGVLGAGLLVAILLGADLARAAAARRAGIT VTGITLGAFGSRLGLAPARDRSTDRGDGSPLSGTGPSGGSAPLGGTGPAGSDDPLAPATGDALADAAVARAGLMVTALAG MVLVAAGAFAPGGTLALVGELALWVGTFALLITVVDLLPAPRSAGGRILAARVLRRTGDEAAAGAAVARAGVITGWTLIV FGAAATFLVGLVGLWAILLGWLALGTSRLAQTQERTSAALRGVFVRDVMIPAPEALPSWKTVAAALDETVLPSRASVFGV RDFAGPLIGVTLLRDLAAVPADDRDLARVARVTIPLDRVATARPEEPLAAVASRLAHRPAAGVIVVVADGPDGLPGMVGT VGPGELARALETTPLHGRVVIPTGFGRRRR
Specific function: Unknown
COG id: COG1994
COG function: function code R; Zn-dependent proteases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000644 - InterPro: IPR008915 - InterPro: IPR016483 [H]
Pfam domain/function: PF00571 CBS; PF02163 Peptidase_M50 [H]
EC number: NA
Molecular weight: Translated: 43010; Mature: 42878
Theoretical pI: Translated: 11.72; Mature: 11.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKDGSRPTALPPIAVRPGLFVSVAVVTVLLGALTLPATVPGRPGFAYFSGGVLGAGLL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHH VAILLGADLARAAAARRAGITVTGITLGAFGSRLGLAPARDRSTDRGDGSPLSGTGPSGG HHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC SAPLGGTGPAGSDDPLAPATGDALADAAVARAGLMVTALAGMVLVAAGAFAPGGTLALVG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH ELALWVGTFALLITVVDLLPAPRSAGGRILAARVLRRTGDEAAAGAAVARAGVITGWTLI HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VFGAAATFLVGLVGLWAILLGWLALGTSRLAQTQERTSAALRGVFVRDVMIPAPEALPSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH KTVAAALDETVLPSRASVFGVRDFAGPLIGVTLLRDLAAVPADDRDLARVARVTIPLDRV HHHHHHHHHHHCCCCHHHEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHH ATARPEEPLAAVASRLAHRPAAGVIVVVADGPDGLPGMVGTVGPGELARALETTPLHGRV HCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEE VIPTGFGRRRR EEECCCCCCCC >Mature Secondary Structure STKDGSRPTALPPIAVRPGLFVSVAVVTVLLGALTLPATVPGRPGFAYFSGGVLGAGLL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHH VAILLGADLARAAAARRAGITVTGITLGAFGSRLGLAPARDRSTDRGDGSPLSGTGPSGG HHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC SAPLGGTGPAGSDDPLAPATGDALADAAVARAGLMVTALAGMVLVAAGAFAPGGTLALVG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH ELALWVGTFALLITVVDLLPAPRSAGGRILAARVLRRTGDEAAAGAAVARAGVITGWTLI HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VFGAAATFLVGLVGLWAILLGWLALGTSRLAQTQERTSAALRGVFVRDVMIPAPEALPSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH KTVAAALDETVLPSRASVFGVRDFAGPLIGVTLLRDLAAVPADDRDLARVARVTIPLDRV HHHHHHHHHHHCCCCHHHEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHH ATARPEEPLAAVASRLAHRPAAGVIVVVADGPDGLPGMVGTVGPGELARALETTPLHGRV HCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEE VIPTGFGRRRR EEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]