| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is polA [H]
Identifier: 158313878
GI number: 158313878
Start: 2455742
End: 2458477
Strand: Direct
Name: polA [H]
Synonym: Franean1_2043
Alternate gene names: 158313878
Gene position: 2455742-2458477 (Clockwise)
Preceding gene: 158313876
Following gene: 158313879
Centisome position: 27.34
GC content: 70.83
Gene sequence:
>2736_bases GTGCCTGCGACTACCTCGTCCCCGTCCCGCGGTTCGTCGGCGTCCGGCGTCCCGTCGACGTCCGCGGACCGTCCGCGGCT GCTGCTGCTCGACGGGCACTCGCTGGCCTACCGCGCCTTCTTCGCGCTTCCGGTGGAGAACTTCTCGACCACCACCGGCC AGCCGACGAACGCCGTCTACGGCTTCACCTCGATGTTGATCAACGTTCTGCGCGACGAGAAGCCCACTCACGTCGCCGTC GCGTGGGATCTGCCCACCCCGACGTTTCGGCACACGCAGTACGCCGAGTACAAGGCCGGTCGTTCGGAGACGCCGGCGGA CTTCGTCGGCCAGGTCGCGCTGATCCACCAGGTCTGCGACGCGCTGGCGGTGCCCGGGGTGAGCGCCGCCGGGTACGAGG CCGACGACGTGATCGCCACCCTCGCCACCCAGGCGTCCGCGGAGGGGATGGACGTCCTGGTCGTGACCGGCGACCGCGAC GCGCTGCAGCTGGTGAACGAGCGGGTGACGGTGCTGATGACCCGCAAGGGCATCAGCGACATGACGCGTTTCACCCCCGA CGAGGTGCAGGCCAAGTACGGCCTGTCCCCGGCGCAGTACCCCGACTTCGCCGCGCTGCGCGGCGACCCGTCCGACAACC TGCCCTCGGTGCCCGGGGTGGGGGAGAAGACGGCCACCAAGTGGATCCAGCAGTTCGGTTCGCTGGCCGAGCTGGTCGAC CGGGCCGACGAGATCGGCGGCAAGACCGGCGCGTCGCTGCGGGAGCACCTGTCCAACGTCATCCGTAACCGTTCGCTGAC CGAGCTGGCCCGTGAGGTGCCGCTGGAGCTGACGCCGGCAGACCTGCGCCTGCACCCCTGGGATCGCGAGGCCGTCCACC AGCTCTTCGACACGCTGCAGTTCCGGGTGCTGCGGGAGCGGCTGTACGCGGCGCTGTCGGTGGCGCCGCCGGCCGCCGAC GAGGGCTTCGAGATCGAGCTGAGCATGCTCGGGCCGGACGAACTCGCATCGTGGCTCGCCGAGCACGCCTCCGGCGCCGG CCGCACGGGCCTGCACCTGCGCGGCACCTGGGGCCGGGGCACCGGGGTGATCGTCTCGGTGGCCCTCGCCGCCGCCGACG GCGCCGCCGCCTGGATCGACCCGACCCAGCTCACCGCCGGCGACTCCGTGGCCCTCGGCGACTGGCTGGCCGACCCGGAC AGGGCGAAGGCCGGCCACGACCTCAAGGGCCCGATGCTGGCGCTGGCCGAGGCCGGTTTCACCCTGGCCGGTGTCACCAG CGACACCGCGCTCGCGGCCTACCTGGCGCTGCCCGGCCAGCGCTCCTTCGACCTCGCCGACCTGGCCCTGCGCTACCTGC ACCGCGAGCTGAAGTCGGACGCCCCGAGCAACGGCCAGCTCACCCTCGACGGCTCCGGCGAGGCCGACGAGGCGGAGGCC GACGCGATCCGCGCCCGGGCCGCGCTCGAGCTGGCCGACGCCCTCGACGGCGACCTGGAGCGCAGGTCCGCGGCCCGCCT GCTGCGGGAGATGGAACTCCCGCTGGTGACCATCCTGGCGACGATGGAGCGCGCGGGCATAGCGGCCGACGAGGATCACC TCCTCGAGCTGCAGAAGCACTACGGCGGTGAGGTGTCCGACGTCGCCGCACAGGCGCACGGCATCGTCGGGCGCACCTTC AACCTCGGCTCGCCCAAGCAGCTCCAGCAGATCCTGTTCGACGAGCTCGCGCTCCCGAAGACCAAGCGCATCAAGACCGG CTACACGACCGACGCCGACGCGCTGGCGTGGCTGGCCACCCAGTCCGACCACCCGCTGATCCCCGTGCTGCTGCACCACC GCGACGTCGCCCGGCTCAAGACCGTCGTCGACTCACTCATCCCGATGATCGACGACGCCGGCCGGATCCACACGACGTTC AACCAGATGATCGCGGCGACCGGCCGGCTGTCGTCCACCGACCCGAACCTGCAGAACATCCCGATCCGCACCCCGCAGGG CCGGCAGATCCGGCAGGCGTTCGTGGTCGGCCAGGGGTACGAGACACTGCTGACGGCCGACTACTCGCAGATCGAGATGC GGCTGATGGCGCACCTGTCCGGTGATGCCGGCCTCATCGAGGCGTTCGCATCGGGCGAGGACCTCCATTCCTTCGTGGCC GCGCAGGCGTTCGGGCTGCCGGTCTCCGAGGTCGATCCCGAGCTGCGCCGGCGTATCAAGGCGATGTCCTACGGGCTGGC CTATGGCCTGTCCGCCTTCGGGCTCGCCGGCCAACTCGGAATCGCCCCCGATGAGGCACGCGAGCAGATGGACGCCTATT TCGCCCGTTTCGGCGGCGTCCGGGACTTTCTGCGCGGGGTCGTCGACCAGGCCCGCCGTGATGGTTACACCGAGACCATC ATGGGCCGCCGCCGTTACCTGCCCGATCTGACCAGCGACAACACCCAGCGCCGGCAGATGGCTGAGCGGATGGCGCTGAA CGCCCCCATCCAGGGATCGGCGGCTGATATCATCAAGATTGCTATGTTGGGCGTGGGGCGGGCGCTGCGCTCGCGTGACC TGAGCTCCAGGCTGCTGCTGCAGGTGCACGACGAACTCGTCCTGGAGATCGCCCCCGGCGAGCGGGCTGAGGTCGAGGCG TTGGTCCGAGCCGAGATGGGCAGCGCGTACGAGATGTCCGTGCCGCTCGAGGTGAGCGTCGGCGCCGGCCGGACCTGGGA CGAAGCCGGTCACTGA
Upstream 100 bases:
>100_bases TCCGGCGGCGTAGGGCTCGTGGCGCGTCCCGGTTGTATCTCCTCCTGGCCCTCCGCCGGACATGCGCGGACCTGTCGTAC CCACGGCCTAGACTCGCCGC
Downstream 100 bases:
>100_bases CACCGGCGACCGGAGCCTGGCTTCCCTGGTTTCCGCCTCTTTTCCGCCTTTCCGGCGATGGAGTCGACAATCTCAGCCGT GGTCATCGTCGTCGGGGTTG
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 911; Mature: 910
Protein sequence:
>911_residues MPATTSSPSRGSSASGVPSTSADRPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEKPTHVAV AWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCDALAVPGVSAAGYEADDVIATLATQASAEGMDVLVVTGDRD ALQLVNERVTVLMTRKGISDMTRFTPDEVQAKYGLSPAQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVD RADEIGGKTGASLREHLSNVIRNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQFRVLRERLYAALSVAPPAAD EGFEIELSMLGPDELASWLAEHASGAGRTGLHLRGTWGRGTGVIVSVALAAADGAAAWIDPTQLTAGDSVALGDWLADPD RAKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPGQRSFDLADLALRYLHRELKSDAPSNGQLTLDGSGEADEAEA DAIRARAALELADALDGDLERRSAARLLREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVSDVAAQAHGIVGRTF NLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLKTVVDSLIPMIDDAGRIHTTF NQMIAATGRLSSTDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVA AQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETI MGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEA LVRAEMGSAYEMSVPLEVSVGAGRTWDEAGH
Sequences:
>Translated_911_residues MPATTSSPSRGSSASGVPSTSADRPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEKPTHVAV AWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCDALAVPGVSAAGYEADDVIATLATQASAEGMDVLVVTGDRD ALQLVNERVTVLMTRKGISDMTRFTPDEVQAKYGLSPAQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVD RADEIGGKTGASLREHLSNVIRNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQFRVLRERLYAALSVAPPAAD EGFEIELSMLGPDELASWLAEHASGAGRTGLHLRGTWGRGTGVIVSVALAAADGAAAWIDPTQLTAGDSVALGDWLADPD RAKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPGQRSFDLADLALRYLHRELKSDAPSNGQLTLDGSGEADEAEA DAIRARAALELADALDGDLERRSAARLLREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVSDVAAQAHGIVGRTF NLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLKTVVDSLIPMIDDAGRIHTTF NQMIAATGRLSSTDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVA AQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETI MGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEA LVRAEMGSAYEMSVPLEVSVGAGRTWDEAGH >Mature_910_residues PATTSSPSRGSSASGVPSTSADRPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEKPTHVAVA WDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCDALAVPGVSAAGYEADDVIATLATQASAEGMDVLVVTGDRDA LQLVNERVTVLMTRKGISDMTRFTPDEVQAKYGLSPAQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDR ADEIGGKTGASLREHLSNVIRNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQFRVLRERLYAALSVAPPAADE GFEIELSMLGPDELASWLAEHASGAGRTGLHLRGTWGRGTGVIVSVALAAADGAAAWIDPTQLTAGDSVALGDWLADPDR AKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPGQRSFDLADLALRYLHRELKSDAPSNGQLTLDGSGEADEAEAD AIRARAALELADALDGDLERRSAARLLREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVSDVAAQAHGIVGRTFN LGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLKTVVDSLIPMIDDAGRIHTTFN QMIAATGRLSSTDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVAA QAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIM GRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEAL VRAEMGSAYEMSVPLEVSVGAGRTWDEAGH
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=519, Percent_Identity=32.9479768786127, Blast_Score=243, Evalue=5e-64, Organism=Homo sapiens, GI139394648, Length=618, Percent_Identity=27.5080906148867, Blast_Score=212, Evalue=1e-54, Organism=Escherichia coli, GI1790294, Length=928, Percent_Identity=37.6077586206897, Blast_Score=524, Evalue=1e-149, Organism=Escherichia coli, GI226510970, Length=233, Percent_Identity=26.6094420600858, Blast_Score=88, Evalue=2e-18, Organism=Caenorhabditis elegans, GI86563272, Length=433, Percent_Identity=28.175519630485, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI17933644, Length=598, Percent_Identity=30.4347826086957, Blast_Score=218, Evalue=1e-56,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 98198; Mature: 98067
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPATTSSPSRGSSASGVPSTSADRPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVY CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEHHHEEEECCCCCCCCCCCCHHHH GFTSMLINVLRDEKPTHVAVAWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCD HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH ALAVPGVSAAGYEADDVIATLATQASAEGMDVLVVTGDRDALQLVNERVTVLMTRKGISD HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHEEEEECCCHHH MTRFTPDEVQAKYGLSPAQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVD HHHCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RADEIGGKTGASLREHLSNVIRNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQ HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCEECCCCHHHHHHHHHHHH FRVLRERLYAALSVAPPAADEGFEIELSMLGPDELASWLAEHASGAGRTGLHLRGTWGRG HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCC TGVIVSVALAAADGAAAWIDPTQLTAGDSVALGDWLADPDRAKAGHDLKGPMLALAEAGF CCHHHEEEHHHCCCCEEECCCCCCCCCCCEECCCCCCCCCHHCCCCCCCCHHHHHHHCCC TLAGVTSDTALAAYLALPGQRSFDLADLALRYLHRELKSDAPSNGQLTLDGSGEADEAEA EEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHH DAIRARAALELADALDGDLERRSAARLLREMELPLVTILATMERAGIAADEDHLLELQKH HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH YGGEVSDVAAQAHGIVGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLAT HCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEC QSDHPLIPVLLHHRDVARLKTVVDSLIPMIDDAGRIHTTFNQMIAATGRLSSTDPNLQNI CCCCCEEHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC PIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVA CCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH AQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGGV HHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCH RDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKI HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH AMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEALVRAEMGSAYEMSVPLEVSV HHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCEEEEC GAGRTWDEAGH CCCCCCCCCCC >Mature Secondary Structure PATTSSPSRGSSASGVPSTSADRPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVY CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEHHHEEEECCCCCCCCCCCCHHHH GFTSMLINVLRDEKPTHVAVAWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCD HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH ALAVPGVSAAGYEADDVIATLATQASAEGMDVLVVTGDRDALQLVNERVTVLMTRKGISD HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHEEEEECCCHHH MTRFTPDEVQAKYGLSPAQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVD HHHCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RADEIGGKTGASLREHLSNVIRNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQ HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCEECCCCHHHHHHHHHHHH FRVLRERLYAALSVAPPAADEGFEIELSMLGPDELASWLAEHASGAGRTGLHLRGTWGRG HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCC TGVIVSVALAAADGAAAWIDPTQLTAGDSVALGDWLADPDRAKAGHDLKGPMLALAEAGF CCHHHEEEHHHCCCCEEECCCCCCCCCCCEECCCCCCCCCHHCCCCCCCCHHHHHHHCCC TLAGVTSDTALAAYLALPGQRSFDLADLALRYLHRELKSDAPSNGQLTLDGSGEADEAEA EEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHH DAIRARAALELADALDGDLERRSAARLLREMELPLVTILATMERAGIAADEDHLLELQKH HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH YGGEVSDVAAQAHGIVGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLAT HCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEC QSDHPLIPVLLHHRDVARLKTVVDSLIPMIDDAGRIHTTFNQMIAATGRLSSTDPNLQNI CCCCCEEHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC PIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVA CCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH AQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGGV HHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCH RDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKI HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH AMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEALVRAEMGSAYEMSVPLEVSV HHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCEEEEC GAGRTWDEAGH CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]