| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is livJ [C]
Identifier: 158313871
GI number: 158313871
Start: 2447420
End: 2448970
Strand: Direct
Name: livJ [C]
Synonym: Franean1_2036
Alternate gene names: 158313871
Gene position: 2447420-2448970 (Clockwise)
Preceding gene: 158313870
Following gene: 158313872
Centisome position: 27.25
GC content: 75.37
Gene sequence:
>1551_bases GTGTCGTCCGCCGCGCGCCGGCTGGACCACTGGGCCCGCAGGTCGGCGCGTGACACCCGGGGGCGGGTCATTCTCGCCGC GGTGCTGGTGCTGGTGCTCGCTGTCCCGGCCGGGCTCGGCCTGGGGCTCGCCGCGGTGCTGGGCGGTGCTGGTTCTGGAG CGTCGGCGACGAAGGTCGCCACGATCGGCGTGATGGCGCCCCTGTCGGGGGGCTCGGCCGACGCGGGCGTGAGTGTGCGC GACGCGGTCACCCTCGCGGTCGAGGAGGCCAACCGGCAGGGGGCCGTCCCGGGCTGGAAGCTCGAGGTGGCCGCCCACGA CGACCTCGCCCGCCCCGACGGCGGCGCGGCCGGGGCGGATCTGTTCGCCGACGACAGCCGGGTGATCGGGGTCGTCGGCC CGCTCAGCTCCAGCGTGGCGATGGTGTCCCTGGACAGGCTGAGCAGCGCGGGCATCCCGGTGATCTCGCCGTCCAACGCG GAACCGACGCTGACGGCGCCGGAGACCGCGTCGAACACCCGCCCGTACCCCACGTACTTCCGGCTCAGCGGCACCGACGA ACTGCTCGCCCAGGTGACGGCCGACTATGCCGTGAACACGCTGGGTCGCTCGCGGATCAGTGTCGTCGACGGCGGCCCGG ACTACGGCACGATCACGCTCGCGGAGCGGTTCGCCCGGCACGCGCGGAACGCGGGGGCGACCGTGCCGACGGTGCACCGG GTTGACGGCGCGTCGACCGCCGGCGAGCAGGTCCGCGAGACGGCGAAGGCCATCCAGGACGAGGCGCCCGATCTGGTGTA CCTGGCGACGGGTGCCGACTTCGCCGGCGAGCTGCGTGGAGCGCTCGCGGACGAGGGGGTGGCCGTCCAGGTGATGGGCG CGGACGGCCTGCTCGACCGCGACTACGTGGAGCGCTCGGACTCCATGGCGGACGGTGACGTCGTCGCGGACCTGTCGGTG CCGCTGTCACGCCTCCCGGCGGCCGGTGCGTTCGTGACGGCCTACTCGGAGCGGTTCGGCGGGCCAACGGTGGGCGCGGA CGGGCTCCTGCCCGACGGGACGTCCACCGAGCCGGCGCCGGCGCCGGCTCCGGCGGCTTCCGGCGCTCCGGGTCGCGCCA CGGCCACGTCCGCGTCCGTGGACCCGAGCCACACGTCCGGTTCCGTGTCCGCGGCCGACGAGGCGGGCGCGAGCAGATCC GGCGCGAGCGAGGCCGGTACGGCGAGCCCCTCGGAGCGTGAGCTGGAGGTGCGCCGCGCCCGGGACGCCGCCCTGGCGGA TCTGCGGGAGGCGGCGATCCCGCCGGTGGCGGCCTACGCCTACGACGCCGCGCGGGCGCTGATCCGGGCGGCGGCGGCGG TCCTGCCCGGCCGGACGGAGGTGGACGTGGCGACCCGCCAGGCGCTGGTCCGCGCGGTCGGTGCCGGGGACTTCGCCGGA GTCACCGGCCAGGTCGCCTTCGACACGAAGGGCGACGTCATCGATCCGCGCGTGGTGCTGTACTCGGTGCTCGGTGGAAA CTTCGTCCCGTTGCAGGTCGACTCACCCTGA
Upstream 100 bases:
>100_bases CGCGGCGGGCCGGAATCCAGCAGGCGGTTCAGCGCCCGCGGCGGGCTCGGAGCCGGCGCGGCCGGCTGCCGGGGTGACAC TCGCCGGGTGGGTGCGTCCG
Downstream 100 bases:
>100_bases TTGCTTCCCGCGACGTCTGGGTGCCAAAGCACGCCTAGTGCCACACGAAGTCACGACACTCTTACTTTCAGCTTTCATCG CTCGGGTGGAGCCGCTAGGT
Product: extracellular ligand-binding receptor
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 516; Mature: 515
Protein sequence:
>516_residues MSSAARRLDHWARRSARDTRGRVILAAVLVLVLAVPAGLGLGLAAVLGGAGSGASATKVATIGVMAPLSGGSADAGVSVR DAVTLAVEEANRQGAVPGWKLEVAAHDDLARPDGGAAGADLFADDSRVIGVVGPLSSSVAMVSLDRLSSAGIPVISPSNA EPTLTAPETASNTRPYPTYFRLSGTDELLAQVTADYAVNTLGRSRISVVDGGPDYGTITLAERFARHARNAGATVPTVHR VDGASTAGEQVRETAKAIQDEAPDLVYLATGADFAGELRGALADEGVAVQVMGADGLLDRDYVERSDSMADGDVVADLSV PLSRLPAAGAFVTAYSERFGGPTVGADGLLPDGTSTEPAPAPAPAASGAPGRATATSASVDPSHTSGSVSAADEAGASRS GASEAGTASPSERELEVRRARDAALADLREAAIPPVAAYAYDAARALIRAAAAVLPGRTEVDVATRQALVRAVGAGDFAG VTGQVAFDTKGDVIDPRVVLYSVLGGNFVPLQVDSP
Sequences:
>Translated_516_residues MSSAARRLDHWARRSARDTRGRVILAAVLVLVLAVPAGLGLGLAAVLGGAGSGASATKVATIGVMAPLSGGSADAGVSVR DAVTLAVEEANRQGAVPGWKLEVAAHDDLARPDGGAAGADLFADDSRVIGVVGPLSSSVAMVSLDRLSSAGIPVISPSNA EPTLTAPETASNTRPYPTYFRLSGTDELLAQVTADYAVNTLGRSRISVVDGGPDYGTITLAERFARHARNAGATVPTVHR VDGASTAGEQVRETAKAIQDEAPDLVYLATGADFAGELRGALADEGVAVQVMGADGLLDRDYVERSDSMADGDVVADLSV PLSRLPAAGAFVTAYSERFGGPTVGADGLLPDGTSTEPAPAPAPAASGAPGRATATSASVDPSHTSGSVSAADEAGASRS GASEAGTASPSERELEVRRARDAALADLREAAIPPVAAYAYDAARALIRAAAAVLPGRTEVDVATRQALVRAVGAGDFAG VTGQVAFDTKGDVIDPRVVLYSVLGGNFVPLQVDSP >Mature_515_residues SSAARRLDHWARRSARDTRGRVILAAVLVLVLAVPAGLGLGLAAVLGGAGSGASATKVATIGVMAPLSGGSADAGVSVRD AVTLAVEEANRQGAVPGWKLEVAAHDDLARPDGGAAGADLFADDSRVIGVVGPLSSSVAMVSLDRLSSAGIPVISPSNAE PTLTAPETASNTRPYPTYFRLSGTDELLAQVTADYAVNTLGRSRISVVDGGPDYGTITLAERFARHARNAGATVPTVHRV DGASTAGEQVRETAKAIQDEAPDLVYLATGADFAGELRGALADEGVAVQVMGADGLLDRDYVERSDSMADGDVVADLSVP LSRLPAAGAFVTAYSERFGGPTVGADGLLPDGTSTEPAPAPAPAASGAPGRATATSASVDPSHTSGSVSAADEAGASRSG ASEAGTASPSERELEVRRARDAALADLREAAIPPVAAYAYDAARALIRAAAAVLPGRTEVDVATRQALVRAVGAGDFAGV TGQVAFDTKGDVIDPRVVLYSVLGGNFVPLQVDSP
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 51915; Mature: 51784
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAARRLDHWARRSARDTRGRVILAAVLVLVLAVPAGLGLGLAAVLGGAGSGASATKVA CCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEE TIGVMAPLSGGSADAGVSVRDAVTLAVEEANRQGAVPGWKLEVAAHDDLARPDGGAAGAD EEEEEEECCCCCCCCCCCHHHHEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC LFADDSRVIGVVGPLSSSVAMVSLDRLSSAGIPVISPSNAEPTLTAPETASNTRPYPTYF EECCCCEEEEEECCCCCCCCEEEHHHHCCCCCCEECCCCCCCCEECCCCCCCCCCCCEEE RLSGTDELLAQVTADYAVNTLGRSRISVVDGGPDYGTITLAERFARHARNAGATVPTVHR EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCEEEE VDGASTAGEQVRETAKAIQDEAPDLVYLATGADFAGELRGALADEGVAVQVMGADGLLDR CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCH DYVERSDSMADGDVVADLSVPLSRLPAAGAFVTAYSERFGGPTVGADGLLPDGTSTEPAP HHHHHCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC APAPAASGAPGRATATSASVDPSHTSGSVSAADEAGASRSGASEAGTASPSERELEVRRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHH RDAALADLREAAIPPVAAYAYDAARALIRAAAAVLPGRTEVDVATRQALVRAVGAGDFAG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC VTGQVAFDTKGDVIDPRVVLYSVLGGNFVPLQVDSP CCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure SSAARRLDHWARRSARDTRGRVILAAVLVLVLAVPAGLGLGLAAVLGGAGSGASATKVA CHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEE TIGVMAPLSGGSADAGVSVRDAVTLAVEEANRQGAVPGWKLEVAAHDDLARPDGGAAGAD EEEEEEECCCCCCCCCCCHHHHEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC LFADDSRVIGVVGPLSSSVAMVSLDRLSSAGIPVISPSNAEPTLTAPETASNTRPYPTYF EECCCCEEEEEECCCCCCCCEEEHHHHCCCCCCEECCCCCCCCEECCCCCCCCCCCCEEE RLSGTDELLAQVTADYAVNTLGRSRISVVDGGPDYGTITLAERFARHARNAGATVPTVHR EECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCEEEE VDGASTAGEQVRETAKAIQDEAPDLVYLATGADFAGELRGALADEGVAVQVMGADGLLDR CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCH DYVERSDSMADGDVVADLSVPLSRLPAAGAFVTAYSERFGGPTVGADGLLPDGTSTEPAP HHHHHCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC APAPAASGAPGRATATSASVDPSHTSGSVSAADEAGASRSGASEAGTASPSERELEVRRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHH RDAALADLREAAIPPVAAYAYDAARALIRAAAAVLPGRTEVDVATRQALVRAVGAGDFAG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC VTGQVAFDTKGDVIDPRVVLYSVLGGNFVPLQVDSP CCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11756688 [H]