| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313728
Identifier: 158313728
GI number: 158313728
Start: 2270664
End: 2271548
Strand: Direct
Name: 158313728
Synonym: Franean1_1892
Alternate gene names: NA
Gene position: 2270664-2271548 (Clockwise)
Preceding gene: 158313727
Following gene: 158313729
Centisome position: 25.28
GC content: 73.56
Gene sequence:
>885_bases ATGACAGCCGACCCGGCTCGGGGTTTCCACGACGGCGAACTGGCGGTGCAGCAGCGGGCTGGTGTCGCCCGGGAGGCGGC TCGGCTCGCGGGCATGCTCGGGCCGACCCGGTTGCGCCCCGGCTCGACGGCTTTCCTGGCAGGTCTGCGGCTAGCGGCGC TGACCGCGCGCGACCGCGCCGGAACGCTGTGGATCTCGGTCCTGACGGGTCCACCGGGATTCCTCGACGGTGCCGGGGAG CTGCTGCGGATCCGCGCGGCTCCGGCGCCCGGCGACCCGTTGGCCGACCTCGGCGCGGACCAGCCGGTCGGGATCGTGGC GATCGATCCACAGGCGCGGCGCCGAATGCGCGTCAACGGCACGTTGATCTCGGCCCGTCCCGGGAGCCTGGTGGTCGAGG TCGGCGAGGCCTACGGCAACTGCCCGCAGTACATCCAGGAGCGCACGATCGGCACGGGGCCGACCCGCCGGACCGAGCAC CCGGCTCCGCCGGTCGGTGATCGGCTCGACGAGGCGGCCACCCGGATCGTGCGCGCGGCCGACACCTTCTTCCTCGGCAC CATCCATCCGGAACGCGGTGCCGACGCGTCACACCGCGGTGGCCCGGCCGGGTTCGTCCAGGTCGCCGGAGGCGACCTGG CGTGGCCCGACTACCCCGGCAACAACATGTTCAACAGTCTCGGCAACCTGCAGGTCGACGACACGGCCGCGCTGGCCTTC GTCGACTTCGGCACGGGCGACACCGTGCAGCTCTCGGGCCGCGCGCACGTGGAATGGGCGAACCCCGGCCCGGCGGACGA CGACGGCGGAACCGGCCGGCGCGTGGTCTTCACCGTCTCCCGGGTGGTCTCGGGTGGCCCGCCGTTGCCGATCCGCGCTG TCTGA
Upstream 100 bases:
>100_bases GTGTGGAGCATTCGGCTGCCGAGCGGGGCGCGACCGAGGGCCGATTTTCCGTCTCTCGGTGGCGTAGTCGGCATTTGACA GACCGCGAGGTGACGTTGCG
Downstream 100 bases:
>100_bases CCCGCCCCGGTCCGTGCGGACCGGAGCGGAGTCGCCGACCGGGAGCCCGTCGACCTGATCGCGTCACGGGGGCGAGATGT GGCTGGGAAGTAATTTCCAA
Product: pyridoxamine 5'-phosphate oxidase-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MTADPARGFHDGELAVQQRAGVAREAARLAGMLGPTRLRPGSTAFLAGLRLAALTARDRAGTLWISVLTGPPGFLDGAGE LLRIRAAPAPGDPLADLGADQPVGIVAIDPQARRRMRVNGTLISARPGSLVVEVGEAYGNCPQYIQERTIGTGPTRRTEH PAPPVGDRLDEAATRIVRAADTFFLGTIHPERGADASHRGGPAGFVQVAGGDLAWPDYPGNNMFNSLGNLQVDDTAALAF VDFGTGDTVQLSGRAHVEWANPGPADDDGGTGRRVVFTVSRVVSGGPPLPIRAV
Sequences:
>Translated_294_residues MTADPARGFHDGELAVQQRAGVAREAARLAGMLGPTRLRPGSTAFLAGLRLAALTARDRAGTLWISVLTGPPGFLDGAGE LLRIRAAPAPGDPLADLGADQPVGIVAIDPQARRRMRVNGTLISARPGSLVVEVGEAYGNCPQYIQERTIGTGPTRRTEH PAPPVGDRLDEAATRIVRAADTFFLGTIHPERGADASHRGGPAGFVQVAGGDLAWPDYPGNNMFNSLGNLQVDDTAALAF VDFGTGDTVQLSGRAHVEWANPGPADDDGGTGRRVVFTVSRVVSGGPPLPIRAV >Mature_293_residues TADPARGFHDGELAVQQRAGVAREAARLAGMLGPTRLRPGSTAFLAGLRLAALTARDRAGTLWISVLTGPPGFLDGAGEL LRIRAAPAPGDPLADLGADQPVGIVAIDPQARRRMRVNGTLISARPGSLVVEVGEAYGNCPQYIQERTIGTGPTRRTEHP APPVGDRLDEAATRIVRAADTFFLGTIHPERGADASHRGGPAGFVQVAGGDLAWPDYPGNNMFNSLGNLQVDDTAALAFV DFGTGDTVQLSGRAHVEWANPGPADDDGGTGRRVVFTVSRVVSGGPPLPIRAV
Specific function: Unknown
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30611; Mature: 30480
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADPARGFHDGELAVQQRAGVAREAARLAGMLGPTRLRPGSTAFLAGLRLAALTARDRA CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCC GTLWISVLTGPPGFLDGAGELLRIRAAPAPGDPLADLGADQPVGIVAIDPQARRRMRVNG CEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCEEEEEECHHHHCEEEECC TLISARPGSLVVEVGEAYGNCPQYIQERTIGTGPTRRTEHPAPPVGDRLDEAATRIVRAA EEEECCCCCEEEEECHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH DTFFLGTIHPERGADASHRGGPAGFVQVAGGDLAWPDYPGNNMFNSLGNLQVDDTAALAF CEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCEEECCCEEEEE VDFGTGDTVQLSGRAHVEWANPGPADDDGGTGRRVVFTVSRVVSGGPPLPIRAV EECCCCCEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCEECC >Mature Secondary Structure TADPARGFHDGELAVQQRAGVAREAARLAGMLGPTRLRPGSTAFLAGLRLAALTARDRA CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCC GTLWISVLTGPPGFLDGAGELLRIRAAPAPGDPLADLGADQPVGIVAIDPQARRRMRVNG CEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCEEEEEECHHHHCEEEECC TLISARPGSLVVEVGEAYGNCPQYIQERTIGTGPTRRTEHPAPPVGDRLDEAATRIVRAA EEEECCCCCEEEEECHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH DTFFLGTIHPERGADASHRGGPAGFVQVAGGDLAWPDYPGNNMFNSLGNLQVDDTAALAF CEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCEEECCCEEEEE VDFGTGDTVQLSGRAHVEWANPGPADDDGGTGRRVVFTVSRVVSGGPPLPIRAV EECCCCCEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA