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The map label for this gene is ydcM [C]

Identifier: 158313726

GI number: 158313726

Start: 2268700

End: 2269599

Strand: Direct

Name: ydcM [C]

Synonym: Franean1_1890

Alternate gene names: 158313726

Gene position: 2268700-2269599 (Clockwise)

Preceding gene: 158313725

Following gene: 158313727

Centisome position: 25.26

GC content: 67.11

Gene sequence:

>900_bases
GTGGTGAAGCGGGCATATCGTTATCGCTTCTACCCGAATCCCGAGCAGGTCGCGCAGCTGGCCCGTACCTTCGGCTGTGT
CCGCTACGTCTACAACCGGGCGCTGGCCGAACGGTCCCGTGCCTGGACCCAGGAGCGGCGCAGGGTCACGCACGCGGAGA
CCGACAGGATGCTCACCGTGTGGAAGCGGGACACGGAGACGGCGTGGCTGGCCGAACCGTCGAAAGGGCCGCTGCAGGCC
ACGCCGCGCCATCTGCAGACGGCGTTCGTGAACTTCTGGGAAAAACGGGCCGGATATCCGTCTTTCAAGAAGAAGGGCAG
GAGCCTCGATTCGGCGACCTATTTCCGGAACTGCTTCACCTACCGGAACGGGAACATCACACTGGCCAAGCAGGACCGGC
CGTTGGACATCGTCTGGTCGCGTCCGCTGCCCGAGGGCGCGACGCCCTCGCGGGTGACGGTGTCGCGGAACGCCCGCGGC
CAGTACCACGTCTCGATCCTGGTCGAGGACACCGTCACCAGCCTCCCGCCGGCTGGGGGGCAGGTCGGGATCGACGCGGG
CATCACAGCGCTGGTCACCTTGTCGACCGGGGAGAAAGTCACCAACCCCCGGCACGAGCGCCGCGACCGTGTCCGGCTGG
TGCGGGCGCAGCGGGACCTGTCCCGCAAGGCGAAGGGCTCGGCGAACCGGGTGAAGGCCCGCGCGAGGGTCGCGGAGATT
CACGGCAGGATCGCGGATCGGCGCCGGGATCATCTACACAAGCTGTCCACGAGGATCATCCGCGAGAACCAAACGGTGGT
CGTCGAGGACCTGTCCGTCCGCACCATGGTCCGCAACCACTCGCTGGCCCGGGCTATCAGTGAGACCACCTCGCTCCTGA
AGCGAGGAGGCGTCCGTTGA

Upstream 100 bases:

>100_bases
GGGACACGTGGCGCGCAAGCCCTGTACTTCAAGGCAGGGTTAGCGCATCAACGACAGGGCGACAGGGAAGTTCGTTATTC
TGTCGGGTATGGGTTCTCGG

Downstream 100 bases:

>100_bases
CGAAGCAGGAACCCGGATCGCGAGGTACGGGAATCCCTGGAGTTCACACCGGGGAGGATGTCAACTTCTCCGATGGTGCG
GCGGTCGTCCTGGGGCCGGG

Product: DNA (cytosine-5-)-methyltransferase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MVKRAYRYRFYPNPEQVAQLARTFGCVRYVYNRALAERSRAWTQERRRVTHAETDRMLTVWKRDTETAWLAEPSKGPLQA
TPRHLQTAFVNFWEKRAGYPSFKKKGRSLDSATYFRNCFTYRNGNITLAKQDRPLDIVWSRPLPEGATPSRVTVSRNARG
QYHVSILVEDTVTSLPPAGGQVGIDAGITALVTLSTGEKVTNPRHERRDRVRLVRAQRDLSRKAKGSANRVKARARVAEI
HGRIADRRRDHLHKLSTRIIRENQTVVVEDLSVRTMVRNHSLARAISETTSLLKRGGVR

Sequences:

>Translated_299_residues
MVKRAYRYRFYPNPEQVAQLARTFGCVRYVYNRALAERSRAWTQERRRVTHAETDRMLTVWKRDTETAWLAEPSKGPLQA
TPRHLQTAFVNFWEKRAGYPSFKKKGRSLDSATYFRNCFTYRNGNITLAKQDRPLDIVWSRPLPEGATPSRVTVSRNARG
QYHVSILVEDTVTSLPPAGGQVGIDAGITALVTLSTGEKVTNPRHERRDRVRLVRAQRDLSRKAKGSANRVKARARVAEI
HGRIADRRRDHLHKLSTRIIRENQTVVVEDLSVRTMVRNHSLARAISETTSLLKRGGVR
>Mature_299_residues
MVKRAYRYRFYPNPEQVAQLARTFGCVRYVYNRALAERSRAWTQERRRVTHAETDRMLTVWKRDTETAWLAEPSKGPLQA
TPRHLQTAFVNFWEKRAGYPSFKKKGRSLDSATYFRNCFTYRNGNITLAKQDRPLDIVWSRPLPEGATPSRVTVSRNARG
QYHVSILVEDTVTSLPPAGGQVGIDAGITALVTLSTGEKVTNPRHERRDRVRLVRAQRDLSRKAKGSANRVKARARVAEI
HGRIADRRRDHLHKLSTRIIRENQTVVVEDLSVRTMVRNHSLARAISETTSLLKRGGVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=263, Percent_Identity=33.8403041825095, Blast_Score=138, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 34282; Mature: 34282

Theoretical pI: Translated: 11.80; Mature: 11.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKRAYRYRFYPNPEQVAQLARTFGCVRYVYNRALAERSRAWTQERRRVTHAETDRMLTV
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
WKRDTETAWLAEPSKGPLQATPRHLQTAFVNFWEKRAGYPSFKKKGRSLDSATYFRNCFT
EECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHE
YRNGNITLAKQDRPLDIVWSRPLPEGATPSRVTVSRNARGQYHVSILVEDTVTSLPPAGG
EECCCEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECHHHHCCCCCC
QVGIDAGITALVTLSTGEKVTNPRHERRDRVRLVRAQRDLSRKAKGSANRVKARARVAEI
CEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
HGRIADRRRDHLHKLSTRIIRENQTVVVEDLSVRTMVRNHSLARAISETTSLLKRGGVR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVKRAYRYRFYPNPEQVAQLARTFGCVRYVYNRALAERSRAWTQERRRVTHAETDRMLTV
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
WKRDTETAWLAEPSKGPLQATPRHLQTAFVNFWEKRAGYPSFKKKGRSLDSATYFRNCFT
EECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHE
YRNGNITLAKQDRPLDIVWSRPLPEGATPSRVTVSRNARGQYHVSILVEDTVTSLPPAGG
EECCCEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECHHHHCCCCCC
QVGIDAGITALVTLSTGEKVTNPRHERRDRVRLVRAQRDLSRKAKGSANRVKARARVAEI
CEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
HGRIADRRRDHLHKLSTRIIRENQTVVVEDLSVRTMVRNHSLARAISETTSLLKRGGVR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]