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The map label for this gene is ycaJ [C]

Identifier: 158313527

GI number: 158313527

Start: 2022522

End: 2023919

Strand: Direct

Name: ycaJ [C]

Synonym: Franean1_1691

Alternate gene names: 158313527

Gene position: 2022522-2023919 (Clockwise)

Preceding gene: 158313526

Following gene: 158313528

Centisome position: 22.52

GC content: 74.54

Gene sequence:

>1398_bases
GTGAGTCTCTTCGACGCGGAGCTGGCCGAGACGCTCGCCTCCTCCGGCCCGCTCGCGGCCCGGTTACGCCCACGCGGCCT
GGACGAGGTCGTCGGGCAGCGTCACCTGCTGGCGGAGGGCAGCCCGCTGCGCCGGCTGGTGGAGGGCGGCGGGACGACCT
CGGTGGTGCTGTGGGGGCCGCCCGGTACCGGGAAGACCACGCTGGCGCACATCGTGTCCCGGGCCACCCGGCGCCGGTTC
CGCGAGCTCTCGGCTGTCACCGCGGGTGTCAAGGACGTCCGCGCGGTGGTGGACGAGGCCCGCGAGACGTTGTCGATGTC
CGGTGTACGGACGGTCCTGTTCATCGACGAGGTGCACCGGTTCACCCGTACCCAGCAGGACGCGCTGCTCCCGTCCGTGG
AACGCGGGTGGGTGACGCTGGTCGCGGCGACCACGGAGAATCCTTTCTTCTGTGTTGTCTCCCCGTTGCTCTCCCGGTCG
CTGCTGCTGACCCTCGAGCCGTTGACCGACGCCGACATCGCCGAGCTGGCGGAGCGTGCGGTGACCGATCCGCGCGGCTA
CGGCGGGCGCCTCGTGCTGGCAGAGGAGGCCCGCGAGCACCTGGTCCGGGTCGCCGGCGGTGACGCCCGGCGCGCGCTGA
CCGCGCTCGAGGCGGGCGCGGAGGCGGCGCTCGCCGCGGCCGGTCCGGACGGAGCCGGTCCGGACGGAGCCGGTCCGGAC
GGAGCCGGTCCCGTCCGCCTCGAGCTCGACCTCCTCGAGCGGGCGGTGGACCGCGCCGCCGTCCGCTACGACCGGGAGGG
CGACCAGCACTACGACGTCGTCAGCGCGTTCATCAAGTCGATGCGCGGCGGTGACGTCGACGCCGCACTGCACTACCTGG
CCAGGATGCTGGAGGCCGGCGAGGACCCGCGTTTCGTCGCGCGCCGAATGATCATCCTGGCGAGCGAGGACGTCGGGATG
GCCGATCCCGGGGCGCTCGGGGTCGCCGTGTCGGCGGCCCAGGCCCTCGAGCTCGTCGGGCTCCCGGAGGCACGGCTCGC
CCTGGCCCAGGCGGTGATCCATCTGACGCTGGCGCCGAAGTCGAACGCGGTGATCACCGCGCTGGACGCGGCGACGGCCG
ACATCCGGTCGGGCCGGGTCGGGCCGGTGCCGCCGCACCTGCGCGACGCGCACTACCGGGGCGCGGCGCGCCTGGGCCAC
GGGGAGCGGTACCGGTATCCGCACGATCACCCGGACGGGGTGGTCCGACAGCAGTACGCGCCGGACGTCCTCGCCGGGTC
GGACTACTACCACCCGACCGGGCACGGGTTCGAGCGGCGGGCGGGCGAGCGGCTCCTGCGGCTGCGCGGAGTGCTGCGGG
GACAGCCGCCAGACCCCCCGGCGGACACCTCCGGCTGA

Upstream 100 bases:

>100_bases
GGTGACGCCCACCCCGGGCGGCGGTGACCTCCGCCAGTGCCCGCGGACGCCGTCCGCCTGCTCTCGGAGCGGTGTCGGAC
CCCGGCCGTACGGTGGTCGG

Downstream 100 bases:

>100_bases
CCACCTGGCGCCGGCCCGTCCGGCCGGGGACGGACACGGACGGCCCGGGGGTTACCGGTGGTGCGTGCACACCGGTCGGT
AAGGTCACTGGCGAACAGCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSLFDAELAETLASSGPLAARLRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTTSVVLWGPPGTGKTTLAHIVSRATRRRF
RELSAVTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHRFTRTQQDALLPSVERGWVTLVAATTENPFFCVVSPLLSRS
LLLTLEPLTDADIAELAERAVTDPRGYGGRLVLAEEAREHLVRVAGGDARRALTALEAGAEAALAAAGPDGAGPDGAGPD
GAGPVRLELDLLERAVDRAAVRYDREGDQHYDVVSAFIKSMRGGDVDAALHYLARMLEAGEDPRFVARRMIILASEDVGM
ADPGALGVAVSAAQALELVGLPEARLALAQAVIHLTLAPKSNAVITALDAATADIRSGRVGPVPPHLRDAHYRGAARLGH
GERYRYPHDHPDGVVRQQYAPDVLAGSDYYHPTGHGFERRAGERLLRLRGVLRGQPPDPPADTSG

Sequences:

>Translated_465_residues
MSLFDAELAETLASSGPLAARLRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTTSVVLWGPPGTGKTTLAHIVSRATRRRF
RELSAVTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHRFTRTQQDALLPSVERGWVTLVAATTENPFFCVVSPLLSRS
LLLTLEPLTDADIAELAERAVTDPRGYGGRLVLAEEAREHLVRVAGGDARRALTALEAGAEAALAAAGPDGAGPDGAGPD
GAGPVRLELDLLERAVDRAAVRYDREGDQHYDVVSAFIKSMRGGDVDAALHYLARMLEAGEDPRFVARRMIILASEDVGM
ADPGALGVAVSAAQALELVGLPEARLALAQAVIHLTLAPKSNAVITALDAATADIRSGRVGPVPPHLRDAHYRGAARLGH
GERYRYPHDHPDGVVRQQYAPDVLAGSDYYHPTGHGFERRAGERLLRLRGVLRGQPPDPPADTSG
>Mature_464_residues
SLFDAELAETLASSGPLAARLRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTTSVVLWGPPGTGKTTLAHIVSRATRRRFR
ELSAVTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHRFTRTQQDALLPSVERGWVTLVAATTENPFFCVVSPLLSRSL
LLTLEPLTDADIAELAERAVTDPRGYGGRLVLAEEAREHLVRVAGGDARRALTALEAGAEAALAAAGPDGAGPDGAGPDG
AGPVRLELDLLERAVDRAAVRYDREGDQHYDVVSAFIKSMRGGDVDAALHYLARMLEAGEDPRFVARRMIILASEDVGMA
DPGALGVAVSAAQALELVGLPEARLALAQAVIHLTLAPKSNAVITALDAATADIRSGRVGPVPPHLRDAHYRGAARLGHG
ERYRYPHDHPDGVVRQQYAPDVLAGSDYYHPTGHGFERRAGERLLRLRGVLRGQPPDPPADTSG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=449, Percent_Identity=38.9755011135858, Blast_Score=296, Evalue=2e-80,
Organism=Homo sapiens, GI18426904, Length=449, Percent_Identity=35.6347438752784, Blast_Score=252, Evalue=5e-67,
Organism=Homo sapiens, GI4506491, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI31881687, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1787119, Length=435, Percent_Identity=45.0574712643678, Blast_Score=353, Evalue=1e-98,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=37.1495327102804, Blast_Score=275, Evalue=1e-74,
Organism=Saccharomyces cerevisiae, GI6324039, Length=236, Percent_Identity=27.9661016949153, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859927, Length=220, Percent_Identity=29.0909090909091, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49523; Mature: 49391

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFDAELAETLASSGPLAARLRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTTSVVLWGP
CCCCHHHHHHHHHCCCCEEECCCCCCHHHHHCCHHHHCCCHHHHHHHHCCCCEEEEEECC
PGTGKTTLAHIVSRATRRRFRELSAVTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FTRTQQDALLPSVERGWVTLVAATTENPFFCVVSPLLSRSLLLTLEPLTDADIAELAERA
HHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEHHHHCCEEEEEECCCCCCHHHHHHHHH
VTDPRGYGGRLVLAEEAREHLVRVAGGDARRALTALEAGAEAALAAAGPDGAGPDGAGPD
CCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCC
GAGPVRLELDLLERAVDRAAVRYDREGDQHYDVVSAFIKSMRGGDVDAALHYLARMLEAG
CCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
EDPRFVARRMIILASEDVGMADPGALGVAVSAAQALELVGLPEARLALAQAVIHLTLAPK
CCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCC
SNAVITALDAATADIRSGRVGPVPPHLRDAHYRGAARLGHGERYRYPHDHPDGVVRQQYA
CCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCC
PDVLAGSDYYHPTGHGFERRAGERLLRLRGVLRGQPPDPPADTSG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SLFDAELAETLASSGPLAARLRPRGLDEVVGQRHLLAEGSPLRRLVEGGGTTSVVLWGP
CCCHHHHHHHHHCCCCEEECCCCCCHHHHHCCHHHHCCCHHHHHHHHCCCCEEEEEECC
PGTGKTTLAHIVSRATRRRFRELSAVTAGVKDVRAVVDEARETLSMSGVRTVLFIDEVHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FTRTQQDALLPSVERGWVTLVAATTENPFFCVVSPLLSRSLLLTLEPLTDADIAELAERA
HHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEHHHHCCEEEEEECCCCCCHHHHHHHHH
VTDPRGYGGRLVLAEEAREHLVRVAGGDARRALTALEAGAEAALAAAGPDGAGPDGAGPD
CCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCC
GAGPVRLELDLLERAVDRAAVRYDREGDQHYDVVSAFIKSMRGGDVDAALHYLARMLEAG
CCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
EDPRFVARRMIILASEDVGMADPGALGVAVSAAQALELVGLPEARLALAQAVIHLTLAPK
CCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCC
SNAVITALDAATADIRSGRVGPVPPHLRDAHYRGAARLGHGERYRYPHDHPDGVVRQQYA
CCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCC
PDVLAGSDYYHPTGHGFERRAGERLLRLRGVLRGQPPDPPADTSG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]