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The map label for this gene is yeaM [H]

Identifier: 158313475

GI number: 158313475

Start: 1955759

End: 1956571

Strand: Direct

Name: yeaM [H]

Synonym: Franean1_1639

Alternate gene names: 158313475

Gene position: 1955759-1956571 (Clockwise)

Preceding gene: 158313473

Following gene: 158313476

Centisome position: 21.77

GC content: 71.46

Gene sequence:

>813_bases
GTGCCTTTTCTCCCCATGCGCCGGTGCGTGACGGTCGGCGCGGGCACGGTGGAGCACCGGGCGGACGAGTTGATCTCCTA
CTGGCACCGGCACGACCTGCACGAGGTCGAGTACGCCGTTTCCGGTCTCGCGGAGATCCGCACACCGACGACCCACTATC
TGATGCCGCCGTCCTACGCCGCGTGGGTGCCGGCCGGGGTGGAGCACTCGCCCCTGCTCAGGAACGTGACCACGATCGCG
GTGTTCTTCGACCCCGCGGTCTTCGACTTCCCGTATTCGCGGGCCGCCGTCATTCCCGTGCCGCCGGTGCTGCGGGAGAT
GATGCGGTACGCGACCCGATGGCCGATCGGCCGGGGCGAGGACGACGCCGAGGCCGACACTTTCTTCAGGGCGCTGGCCG
CGGTGGTCCGCGGCCAGCTCGCGCACGAGGCACCACTGTCGCTGCCCACCGCGGACGATCCCGTCGTCCGGGACGTGATG
GCCTACACCACGGACCACCTCGCCGAGGTCACAGCGGCCCGGGTGTGCCGGGCCGTCGGCATCTCGGAGCGGGTGCTGCG
CCGGCGGTTCGCGGCCGTCCTGGGGCAGTCGTGGCGGGAGTACCTGCGGCAGGTCCGGCTGATCCGGGCCATGGCACTGC
TGAGCACGCCGACGACCTCGGTCGGCGAGATCGCCACCGAGGTGGGCTTCGGCAGCGCGAGCGCGCTCGCACGTGCCTTC
CGGGCGTGGACGGGAGAGAGCCCGTCCGCCTACCGCGACCGCTGGCTCACGACCGCCGCCCTGGACGACCCCAGCCATCT
GACGAGTACGTAA

Upstream 100 bases:

>100_bases
CTTCCCGCGTACCGCGGCGGCCCAGTTCGGACCGGCCTTCCCGCGTACGCGGCGGCCCCGCCCGGACCGGCTGGTCGCCT
ACGATTCCAGCGTGACGGCA

Downstream 100 bases:

>100_bases
GCGTCGCTGTTTCCGGCCAACGGGTGCGTGGGCGGTGTGTTCTGGGAGAAGCTGGGATGAACGCGTCTCATCCGGCAGGC
GCGGTGAACGAGGAGGTCGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MPFLPMRRCVTVGAGTVEHRADELISYWHRHDLHEVEYAVSGLAEIRTPTTHYLMPPSYAAWVPAGVEHSPLLRNVTTIA
VFFDPAVFDFPYSRAAVIPVPPVLREMMRYATRWPIGRGEDDAEADTFFRALAAVVRGQLAHEAPLSLPTADDPVVRDVM
AYTTDHLAEVTAARVCRAVGISERVLRRRFAAVLGQSWREYLRQVRLIRAMALLSTPTTSVGEIATEVGFGSASALARAF
RAWTGESPSAYRDRWLTTAALDDPSHLTST

Sequences:

>Translated_270_residues
MPFLPMRRCVTVGAGTVEHRADELISYWHRHDLHEVEYAVSGLAEIRTPTTHYLMPPSYAAWVPAGVEHSPLLRNVTTIA
VFFDPAVFDFPYSRAAVIPVPPVLREMMRYATRWPIGRGEDDAEADTFFRALAAVVRGQLAHEAPLSLPTADDPVVRDVM
AYTTDHLAEVTAARVCRAVGISERVLRRRFAAVLGQSWREYLRQVRLIRAMALLSTPTTSVGEIATEVGFGSASALARAF
RAWTGESPSAYRDRWLTTAALDDPSHLTST
>Mature_269_residues
PFLPMRRCVTVGAGTVEHRADELISYWHRHDLHEVEYAVSGLAEIRTPTTHYLMPPSYAAWVPAGVEHSPLLRNVTTIAV
FFDPAVFDFPYSRAAVIPVPPVLREMMRYATRWPIGRGEDDAEADTFFRALAAVVRGQLAHEAPLSLPTADDPVVRDVMA
YTTDHLAEVTAARVCRAVGISERVLRRRFAAVLGQSWREYLRQVRLIRAMALLSTPTTSVGEIATEVGFGSASALARAFR
AWTGESPSAYRDRWLTTAALDDPSHLTST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=243, Percent_Identity=26.7489711934156, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29974; Mature: 29843

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFLPMRRCVTVGAGTVEHRADELISYWHRHDLHEVEYAVSGLAEIRTPTTHYLMPPSYA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCHH
AWVPAGVEHSPLLRNVTTIAVFFDPAVFDFPYSRAAVIPVPPVLREMMRYATRWPIGRGE
HHCCCCCCCCHHHHHHHEEEEEECCHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC
DDAEADTFFRALAAVVRGQLAHEAPLSLPTADDPVVRDVMAYTTDHLAEVTAARVCRAVG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ISERVLRRRFAAVLGQSWREYLRQVRLIRAMALLSTPTTSVGEIATEVGFGSASALARAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH
RAWTGESPSAYRDRWLTTAALDDPSHLTST
HHHCCCCCHHHHHHHHHHHCCCCCHHCCCC
>Mature Secondary Structure 
PFLPMRRCVTVGAGTVEHRADELISYWHRHDLHEVEYAVSGLAEIRTPTTHYLMPPSYA
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCHH
AWVPAGVEHSPLLRNVTTIAVFFDPAVFDFPYSRAAVIPVPPVLREMMRYATRWPIGRGE
HHCCCCCCCCHHHHHHHEEEEEECCHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC
DDAEADTFFRALAAVVRGQLAHEAPLSLPTADDPVVRDVMAYTTDHLAEVTAARVCRAVG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ISERVLRRRFAAVLGQSWREYLRQVRLIRAMALLSTPTTSVGEIATEVGFGSASALARAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH
RAWTGESPSAYRDRWLTTAALDDPSHLTST
HHHCCCCCHHHHHHHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]