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The map label for this gene is ydcM [C]

Identifier: 158313452

GI number: 158313452

Start: 1932554

End: 1933816

Strand: Direct

Name: ydcM [C]

Synonym: Franean1_1615

Alternate gene names: 158313452

Gene position: 1932554-1933816 (Clockwise)

Preceding gene: 158313451

Following gene: 158313453

Centisome position: 21.52

GC content: 69.6

Gene sequence:

>1263_bases
GTGAAGACGACGCTGCAGGCGTACCGGTTCGCGCTCGACCCGAACAACGTCGGGCGTGCCGGCTTGCGCCGGCACGCGGG
CGCGTGCAGGTTCGCGTTCAACTGGGGCCTGGCTCGGGTGAAGGCCGCGCTGGCGCAGCGCGAGGCCGAGGAATCCTACG
GGCTGGCCGGCGACCTGCTCACCGCGGTTCCGTGGACGCTGCCCGCGCTGCGCCTGGCCTGGAACACGGTGAAGAACGAC
ATCGCGCCGTGGTGGGCGGAGTGCTCGAAGGAGGCGTTCTCCGCCGGGCTGGCGCAGTTGGCCGCCGGGTTGAAGAACTT
CTCCGACTCCCGCAAGGGCAAACGGAAAGGCCGCACGGCCGGTTTCCCCCGGTTCAAAAAGCGCGGGAAGGACCGTGACT
CGTTCCGGTACACCACCGGCTCCTACGGTCCGGACGGGGACCGGCATGTGAAACTGCCCCGGATCGGCCGGGTGAAGGTC
CACGAGCCGATGGGCGCGCTCACCGCCCTGCTCGGCGACGGCCGTGCCCGCCTCCTCGGCGCGGCCGTGTCCCGCACGGC
TGGCCGCTGGTTCGTGTCGTTCACCGTGCAGGTCGAGAAGAAGCTCCGCAGGACCTCCCGCGCCTACGCCCGGTCACAGC
CGGGCAGCAGCGGCAGGCGCAAGCTCGCCACCGACCTGGCGAAACAGCATGCCCACACCGCCAACCAGCGGCGCGACGGG
CTACACAAGGTCACCACCAACCTCGCCCGGACCCACCACACGGTGGTCATCGAGGATCTGCACGTCGCCGGCATGGTGCG
TGACCACAGCCTGGCGAAGGCGGTCTCCGACGTCGGGATGGGCGAACTGCGCCGCCAGTTGGAGTACAAGTGCGGCCGGT
GGGTTCGCGACCCGAAGACCAGGACGCAGGTGTACGTGCCCGGCTGGCATGGCGCGCACCTGCACGTCGCGGACCGTTGG
TACCCAAGCTCGAAGACCTGTTCCGGCTGTGGCTGGCGAAACCCAAGCCTGACACTGTCGGACCGCACCTTCTCCTGCCC
GTCCTGCGGGCTGGTGATCGACCGCGACGAGAACGCGGCGGTCAACCTGGCTCGGCTCGTCGACCGCGAGTACATCGGCG
ACGTTAAAACAGCCCGTGGAGCCGACCGTAAGACCAACGCGCCAGCACCACCGGCGCGGCGGCGGGTGGCTGTGAAGCGG
GAACCGGGCACGGCCAAGACCGGTCAGACCCGGGGTGCCTCACCGAAAGGTGAAGCGGCATGA

Upstream 100 bases:

>100_bases
TCACCGAGATCCTGACGTCGATGTGCGCCCGGCTCTATGGCCGCCGCGGCGCCGCGAACCGGGCCGCTCGCGCCGTCGCG
GCCGCCACCGAGGCAGCCAT

Downstream 100 bases:

>100_bases
GCGGCACTACCCGGCGCTCTCGTGCAACGGGAGCTGACCTCGCGCGGGGGAATGGTGGCCCTCTGACCTGGGCGGCTGGT
GCTTGATGCACGCAGAATGT

Product: IS891/IS1136/IS1341 family transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MKTTLQAYRFALDPNNVGRAGLRRHAGACRFAFNWGLARVKAALAQREAEESYGLAGDLLTAVPWTLPALRLAWNTVKND
IAPWWAECSKEAFSAGLAQLAAGLKNFSDSRKGKRKGRTAGFPRFKKRGKDRDSFRYTTGSYGPDGDRHVKLPRIGRVKV
HEPMGALTALLGDGRARLLGAAVSRTAGRWFVSFTVQVEKKLRRTSRAYARSQPGSSGRRKLATDLAKQHAHTANQRRDG
LHKVTTNLARTHHTVVIEDLHVAGMVRDHSLAKAVSDVGMGELRRQLEYKCGRWVRDPKTRTQVYVPGWHGAHLHVADRW
YPSSKTCSGCGWRNPSLTLSDRTFSCPSCGLVIDRDENAAVNLARLVDREYIGDVKTARGADRKTNAPAPPARRRVAVKR
EPGTAKTGQTRGASPKGEAA

Sequences:

>Translated_420_residues
MKTTLQAYRFALDPNNVGRAGLRRHAGACRFAFNWGLARVKAALAQREAEESYGLAGDLLTAVPWTLPALRLAWNTVKND
IAPWWAECSKEAFSAGLAQLAAGLKNFSDSRKGKRKGRTAGFPRFKKRGKDRDSFRYTTGSYGPDGDRHVKLPRIGRVKV
HEPMGALTALLGDGRARLLGAAVSRTAGRWFVSFTVQVEKKLRRTSRAYARSQPGSSGRRKLATDLAKQHAHTANQRRDG
LHKVTTNLARTHHTVVIEDLHVAGMVRDHSLAKAVSDVGMGELRRQLEYKCGRWVRDPKTRTQVYVPGWHGAHLHVADRW
YPSSKTCSGCGWRNPSLTLSDRTFSCPSCGLVIDRDENAAVNLARLVDREYIGDVKTARGADRKTNAPAPPARRRVAVKR
EPGTAKTGQTRGASPKGEAA
>Mature_420_residues
MKTTLQAYRFALDPNNVGRAGLRRHAGACRFAFNWGLARVKAALAQREAEESYGLAGDLLTAVPWTLPALRLAWNTVKND
IAPWWAECSKEAFSAGLAQLAAGLKNFSDSRKGKRKGRTAGFPRFKKRGKDRDSFRYTTGSYGPDGDRHVKLPRIGRVKV
HEPMGALTALLGDGRARLLGAAVSRTAGRWFVSFTVQVEKKLRRTSRAYARSQPGSSGRRKLATDLAKQHAHTANQRRDG
LHKVTTNLARTHHTVVIEDLHVAGMVRDHSLAKAVSDVGMGELRRQLEYKCGRWVRDPKTRTQVYVPGWHGAHLHVADRW
YPSSKTCSGCGWRNPSLTLSDRTFSCPSCGLVIDRDENAAVNLARLVDREYIGDVKTARGADRKTNAPAPPARRRVAVKR
EPGTAKTGQTRGASPKGEAA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=398, Percent_Identity=27.3869346733668, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46302; Mature: 46302

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTLQAYRFALDPNNVGRAGLRRHAGACRFAFNWGLARVKAALAQREAEESYGLAGDLL
CCCCHHHHHEECCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TAVPWTLPALRLAWNTVKNDIAPWWAECSKEAFSAGLAQLAAGLKNFSDSRKGKRKGRTA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GFPRFKKRGKDRDSFRYTTGSYGPDGDRHVKLPRIGRVKVHEPMGALTALLGDGRARLLG
CCHHHHHCCCCCCCEEEECCCCCCCCCCEEECCCCCCEEECCHHHHHHHHHCCCHHHHHH
AAVSRTAGRWFVSFTVQVEKKLRRTSRAYARSQPGSSGRRKLATDLAKQHAHTANQRRDG
HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LHKVTTNLARTHHTVVIEDLHVAGMVRDHSLAKAVSDVGMGELRRQLEYKCGRWVRDPKT
HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
RTQVYVPGWHGAHLHVADRWYPSSKTCSGCGWRNPSLTLSDRTFSCPSCGLVIDRDENAA
CCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCHH
VNLARLVDREYIGDVKTARGADRKTNAPAPPARRRVAVKREPGTAKTGQTRGASPKGEAA
HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTTLQAYRFALDPNNVGRAGLRRHAGACRFAFNWGLARVKAALAQREAEESYGLAGDLL
CCCCHHHHHEECCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TAVPWTLPALRLAWNTVKNDIAPWWAECSKEAFSAGLAQLAAGLKNFSDSRKGKRKGRTA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GFPRFKKRGKDRDSFRYTTGSYGPDGDRHVKLPRIGRVKVHEPMGALTALLGDGRARLLG
CCHHHHHCCCCCCCEEEECCCCCCCCCCEEECCCCCCEEECCHHHHHHHHHCCCHHHHHH
AAVSRTAGRWFVSFTVQVEKKLRRTSRAYARSQPGSSGRRKLATDLAKQHAHTANQRRDG
HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LHKVTTNLARTHHTVVIEDLHVAGMVRDHSLAKAVSDVGMGELRRQLEYKCGRWVRDPKT
HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
RTQVYVPGWHGAHLHVADRWYPSSKTCSGCGWRNPSLTLSDRTFSCPSCGLVIDRDENAA
CCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCHH
VNLARLVDREYIGDVKTARGADRKTNAPAPPARRRVAVKREPGTAKTGQTRGASPKGEAA
HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]