| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313368
Identifier: 158313368
GI number: 158313368
Start: 1832504
End: 1833715
Strand: Direct
Name: 158313368
Synonym: Franean1_1530
Alternate gene names: NA
Gene position: 1832504-1833715 (Clockwise)
Preceding gene: 158313366
Following gene: 158313370
Centisome position: 20.4
GC content: 61.14
Gene sequence:
>1212_bases ATGCGGGAGATCCGAGCGTTGGGAGACCGCGTCGCTCAGGTACGAGTACGACGGTCCATGACCCAGGCCGAGCTAGCGGA GCGGGCGGACGTATCCGTTGACCTGGTTACGAAGCTTGAGCAGGGGCAACGTGATGGAATCCGCATCACCACGTTGCATA GCCTTGCCAGGGCGTTGGAAGTACCTACAGCAACGTTCTTCAAGGTGGAGGTGGAGACAGCGATGAGCGACAGCGAAGCG CTGATGCCGCTCCGGCGGTTGCTACTACCCGGGCCCTCAGGCAGTCGGGCGGAGGAGCCTGCGCTTGGGCTCAGGCCGCT ACGGGATCGGCTGGTTGCCCTGACTCAGGACTACCATCATGCCCGGTACTCGCAAGCGGTACGGACAGCTCCCGCGCTGA TTGAGGACATCACGGCCGCGAGCGCTCTCCACCAAGGGGAAGATCAAGAAGCGGCTTACCGCCTTTTGTCGCATGCCTAC ATCATGGCGGCAAGTGTGTTGATCCAGTTGGGGGGCGAAGACCTCGCGTGCGAGGCCATCCGGCGCAGCATGGAAGCGGC AGACTCGGCCGGCGACCAGATTCTCCGTGCTAGTGGTGTGGTTTATTACCGCTGGGCTTTCATCAGACAAGGACGATTCG ACGATGCCGAGAGAGTGGCCGTCGAGATGGCAGCAGAGATTGAGCCGTCAATCATGCGGTCCACCCCCGAACACCTAGGC GTATGGGGTCGACTTATGACGGGTGCCAGCGCTGCCGCCGCGCGGAACAACCGTCCGGAAACTGCCAGTGAACTACTATC GTACGCTCGGTCGTCGGCTGCGCGAATTGTCGATGGAAAGATGGACTATGCAAAATACTGGGCGGCATTTGGTCCATCTC AGGTGGATGCAATAGAGGTGGAAAACGCCATGACTCAGGGAGACGCGCCCCGCGCGTTGCAACTGGCAGGGTCCGTCCAC CGGACCGAAAATATGCCACTGAGTAACTGGACACGTCATCTGTTGGCCGTAGCGGAAGCCCAAACAGCCACCAGAGACTA TCCCAATGCCATACGGACCGTACAGGAGGCCCGTACGTTGACCCCTGAATGGCTCCGAGAGCAGCGGCTAGCCGGGAAGG TGGTTCGGGACCTCTTGGACGCGACCAGCGTCCGCCGTGCTCGCAAGAGCGGCCTAGCCGAGTTGGCTTCGTTCGTTGGG GTTCAGCCCTAA
Upstream 100 bases:
>100_bases GATCCTGATGACCTGGTCAGCACAAGAGAACCGACCGGGAGGGATAGGATGTTGCTACGGAGCGTGATGTGTAGGACGTA GCGTCCTAGGGAGGTGACCC
Downstream 100 bases:
>100_bases GGTTCCGGCCCTCACTCTCACGGTCCAGCTCGACCGGACCGACTGCCCGGTGCGGGGGGGTGAGACCTCCATGGTGCTTG CTCTAGAAAGCGCCATGCAA
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator XRE Family; Transcriptional Regulator; Helix-Turn-Helix Domain Protein; PE-PGRS Family Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Containing Protein; Regulator Protein
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MREIRALGDRVAQVRVRRSMTQAELAERADVSVDLVTKLEQGQRDGIRITTLHSLARALEVPTATFFKVEVETAMSDSEA LMPLRRLLLPGPSGSRAEEPALGLRPLRDRLVALTQDYHHARYSQAVRTAPALIEDITAASALHQGEDQEAAYRLLSHAY IMAASVLIQLGGEDLACEAIRRSMEAADSAGDQILRASGVVYYRWAFIRQGRFDDAERVAVEMAAEIEPSIMRSTPEHLG VWGRLMTGASAAAARNNRPETASELLSYARSSAARIVDGKMDYAKYWAAFGPSQVDAIEVENAMTQGDAPRALQLAGSVH RTENMPLSNWTRHLLAVAEAQTATRDYPNAIRTVQEARTLTPEWLREQRLAGKVVRDLLDATSVRRARKSGLAELASFVG VQP
Sequences:
>Translated_403_residues MREIRALGDRVAQVRVRRSMTQAELAERADVSVDLVTKLEQGQRDGIRITTLHSLARALEVPTATFFKVEVETAMSDSEA LMPLRRLLLPGPSGSRAEEPALGLRPLRDRLVALTQDYHHARYSQAVRTAPALIEDITAASALHQGEDQEAAYRLLSHAY IMAASVLIQLGGEDLACEAIRRSMEAADSAGDQILRASGVVYYRWAFIRQGRFDDAERVAVEMAAEIEPSIMRSTPEHLG VWGRLMTGASAAAARNNRPETASELLSYARSSAARIVDGKMDYAKYWAAFGPSQVDAIEVENAMTQGDAPRALQLAGSVH RTENMPLSNWTRHLLAVAEAQTATRDYPNAIRTVQEARTLTPEWLREQRLAGKVVRDLLDATSVRRARKSGLAELASFVG VQP >Mature_403_residues MREIRALGDRVAQVRVRRSMTQAELAERADVSVDLVTKLEQGQRDGIRITTLHSLARALEVPTATFFKVEVETAMSDSEA LMPLRRLLLPGPSGSRAEEPALGLRPLRDRLVALTQDYHHARYSQAVRTAPALIEDITAASALHQGEDQEAAYRLLSHAY IMAASVLIQLGGEDLACEAIRRSMEAADSAGDQILRASGVVYYRWAFIRQGRFDDAERVAVEMAAEIEPSIMRSTPEHLG VWGRLMTGASAAAARNNRPETASELLSYARSSAARIVDGKMDYAKYWAAFGPSQVDAIEVENAMTQGDAPRALQLAGSVH RTENMPLSNWTRHLLAVAEAQTATRDYPNAIRTVQEARTLTPEWLREQRLAGKVVRDLLDATSVRRARKSGLAELASFVG VQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44337; Mature: 44337
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS50943 HTH_CROC1 ; PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREIRALGDRVAQVRVRRSMTQAELAERADVSVDLVTKLEQGQRDGIRITTLHSLARALE CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEHHHHHHHHHHH VPTATFFKVEVETAMSDSEALMPLRRLLLPGPSGSRAEEPALGLRPLRDRLVALTQDYHH CCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ARYSQAVRTAPALIEDITAASALHQGEDQEAAYRLLSHAYIMAASVLIQLGGEDLACEAI HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH RRSMEAADSAGDQILRASGVVYYRWAFIRQGRFDDAERVAVEMAAEIEPSIMRSTPEHLG HHHHHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCHHHHH VWGRLMTGASAAAARNNRPETASELLSYARSSAARIVDGKMDYAKYWAAFGPSQVDAIEV HHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHH ENAMTQGDAPRALQLAGSVHRTENMPLSNWTRHLLAVAEAQTATRDYPNAIRTVQEARTL HHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC TPEWLREQRLAGKVVRDLLDATSVRRARKSGLAELASFVGVQP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MREIRALGDRVAQVRVRRSMTQAELAERADVSVDLVTKLEQGQRDGIRITTLHSLARALE CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEHHHHHHHHHHH VPTATFFKVEVETAMSDSEALMPLRRLLLPGPSGSRAEEPALGLRPLRDRLVALTQDYHH CCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ARYSQAVRTAPALIEDITAASALHQGEDQEAAYRLLSHAYIMAASVLIQLGGEDLACEAI HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH RRSMEAADSAGDQILRASGVVYYRWAFIRQGRFDDAERVAVEMAAEIEPSIMRSTPEHLG HHHHHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCHHHHH VWGRLMTGASAAAARNNRPETASELLSYARSSAARIVDGKMDYAKYWAAFGPSQVDAIEV HHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHH ENAMTQGDAPRALQLAGSVHRTENMPLSNWTRHLLAVAEAQTATRDYPNAIRTVQEARTL HHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC TPEWLREQRLAGKVVRDLLDATSVRRARKSGLAELASFVGVQP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA