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The map label for this gene is ygcB [C]

Identifier: 158313235

GI number: 158313235

Start: 1682199

End: 1684634

Strand: Direct

Name: ygcB [C]

Synonym: Franean1_1390

Alternate gene names: 158313235

Gene position: 1682199-1684634 (Clockwise)

Preceding gene: 158313234

Following gene: 158313236

Centisome position: 18.73

GC content: 71.31

Gene sequence:

>2436_bases
GTGGGTCGGTCCGCGACCGGCCGAGCCGAACTGCTCACCGAGCACTCCGCGGCGGTGCGGGACGCCGCCCGCCGCGTGGC
CGAGCGGATCGGCCCCGCCGGCCCGATCGCGGCCGAGCCACGGTTCTGGACGTGGGTGGAGCAGGCGGCGCTGCTGCATG
ACGCTGGAAAGGTCGCCGAAGGGTTCCAGCGCCAGGTCCGTCCACGCGGCACCGTGTGGGGTGAGCGGCACGAGATCCTC
TCGCTGGCGTACGTGAACCTGCTGATCGGCGGCCCAGCCGAACAGGACCGGCTGATGGCGGCAGCAGGAGTCGCCTTCCA
TCATCGTTCACTGACCGTCAGCGGAGGCCACGGAACCGGGTTGGCAGCCTCCTACCCGCAGAACGCGGACTGGGAACGAC
GGTTCGGCCGCGACCCCGATGCGCCGCGCGGCGCCCGGATCCAGGTCACCCCGCCCCGCCACCGCGAGCTGATCGCCTGG
TTCACCGGCGAGCTGGGCAGCGCACCGCTCCCGCCGGACGGCCGCAAGCTCTGGGAACATGCTCGGGAACTTTTCCTGGC
CACCCACGACACCTGGATCGACGGCGTCCCAGCCAACCGGGGGCTCCTGGCCGTCCTGCTGCAGGGAGCGGTGACACTCG
CCGACCACTCCGGGTCCGCCCACGTGCCGTTGCAGCGTCACATGCCGCTTCCGCGCGGCTTCCTCCACCGACTCGAGCAG
CCCTACGGGCATCAGCGTGCCGCCGCCGCCAGTGGGAGCCATCTGATCCTGGTCGCGCCGACCGGCAGCGGCAAGACCGA
AGCCGGCCTGGCCTGGGCGTCGGCCCAGCTCGAGAACATGCCCGGCGAGCCACGGCTGGTGTGGGTGCTGCCCTACCGGG
CCTCGATCGACGCCGCCGCCGACAGGTTCACCCGCGACCTCGACCCACCCTCCGACCCGTGCCCGGAACCGGGCGAAAGC
AGCGAGTACCCGAGCACTGTCGTTGCCCGCAGTCCGGACATCGGGGTGCTGCACGCCACCGCCGCTGCCACGCTGCTGAC
CCGTGCGGTGGCCGACGACTGCCCGCCCAGCCCCGCCAGCGCCCGCAAGGCACGGGCCCGCGCGCAGGCCATGCGCCTGT
TCGCCCAGCGCGTCCGGGTCGCCACCCCACACCAACTGCTACGAGCGGCCATCGCGGGACCGCGGTACTCCTCGGTCCTG
CTCGAGCAGGCCAACGCGCTGTTCGTCCTCGACGAGCTGCACGCTTACGACCCGGAGACCTTCGGCCGGATCTGCGCCGC
ACTCGGCATGTGGGACCACCTCGGTAGTCGGATCGCCGTCCTGTCCGCCACCCTCGCGAAACCAATGATCGACCTGGTGG
AGGACAGCCTCGGCGGCCACGTCGATCTGGTCCGCGCGCCGGCCGGCACCGCACCGGACCGTCATCGCCTCGTCCTGGAC
GAACAACCGATCACCGCGCCGGACAATCTGCGGGCCATCTCCCGGTGGATGACCGAAGGCCACAGCGTGCTGGTGGTCGC
CAACACCGTGCGCGTCGCCCAGCAACTCTTCCAGGCACTTGCGCCCGCCGCGCGTGAGGCGTGGCCCGATGATCCGGACG
CCGCGATCCTGCTGCATTCCCGGTTCAAGGGCCGCGACCGGGCCCGGATCGAACATCGGATCACCACCCGGCATCCGGAA
CGGTCAGCAGGGGACCCGGCACTGCGGCAAGGCGGCCTCGTGGTGTCCACCCAAGTCCTGGAAGTGTCACTGTGCCTGGA
CTTCGACCGCGGCGTCAGCGAGCTCGCCCCCATCGAAGCCGTCGCGCAACGAGCCGGGCGGGTCAACCGGCGCGGCCGCC
ATCCGGACGGCCCGGTCGAGTTCCGCGTACACCGCACCGACTCGGCTCTGCCATATCAAGAGGAATCGCTCGATGCCGCC
TGGGCGGCGATGCGCCACACGGCCGCTGGCGCGCAGGCGATCTCAGAGCAGACCGTCGAGGACTGGCTGGATCACGTCTA
CTCCACGCCCTGGGGTGAGCAGTGGGCCGCCACCGCCCGCCAGGCCCGCGACGCGTTCGCAGCGTCGTTCCTGACCTTTC
ACCGTCCCTTCGAGGACCGCTCCGAGTTCGCCCGCAGCCTTGACGAGAACTTCGACACCGTTCAGGTTCTCCACCGCGAC
GACGAAGCCGAGTACCGCACCCTCGCCGACACCGACGACGGCGATCCGCTGCTGGCCGAAGGCCTGCTCATCCCGCTGCG
TTGGCCGCAACTCGCGCGACTACGCCGCGACGGACATGCCGCGGACAACCGGACGCTGCGCCTGGCGGTCGTCGACGCCC
CCTACGACCCGCTCACCGGCCTCGGCCTCGACCTCGAGAACTCTCCGGCGGGCGGCGCCGGTCCCGCGCGACGCGGAGGA
ACCAGGGAAACCGAGACGGTGGAGACCATCCTGTGA

Upstream 100 bases:

>100_bases
GAGCCACCGACCCCGCCGAGCATCCCGAACGGTCGGCGGCCGGCCTCGGTAACGAGGTGGACGGCTGACCGCGGAACTGA
ACCAGGTACTGGCGAAGTCG

Downstream 100 bases:

>100_bases
AATCGGCACCGGTCCATCACGACCACGGGCTCGGCGGGGTCCACATCAAGTACCTGCTGCACTGCCCCCGTCAATTGTGG
CTCTACATGCGTGGCTACCG

Product: CRISPR-associated helicase Cas3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 811; Mature: 810

Protein sequence:

>811_residues
MGRSATGRAELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAEGFQRQVRPRGTVWGERHEIL
SLAYVNLLIGGPAEQDRLMAAAGVAFHHRSLTVSGGHGTGLAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAW
FTGELGSAPLPPDGRKLWEHARELFLATHDTWIDGVPANRGLLAVLLQGAVTLADHSGSAHVPLQRHMPLPRGFLHRLEQ
PYGHQRAAAASGSHLILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCPEPGES
SEYPSTVVARSPDIGVLHATAAATLLTRAVADDCPPSPASARKARARAQAMRLFAQRVRVATPHQLLRAAIAGPRYSSVL
LEQANALFVLDELHAYDPETFGRICAALGMWDHLGSRIAVLSATLAKPMIDLVEDSLGGHVDLVRAPAGTAPDRHRLVLD
EQPITAPDNLRAISRWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLHSRFKGRDRARIEHRITTRHPE
RSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQEESLDAA
WAAMRHTAAGAQAISEQTVEDWLDHVYSTPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARSLDENFDTVQVLHRD
DEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTLRLAVVDAPYDPLTGLGLDLENSPAGGAGPARRGG
TRETETVETIL

Sequences:

>Translated_811_residues
MGRSATGRAELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAEGFQRQVRPRGTVWGERHEIL
SLAYVNLLIGGPAEQDRLMAAAGVAFHHRSLTVSGGHGTGLAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAW
FTGELGSAPLPPDGRKLWEHARELFLATHDTWIDGVPANRGLLAVLLQGAVTLADHSGSAHVPLQRHMPLPRGFLHRLEQ
PYGHQRAAAASGSHLILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCPEPGES
SEYPSTVVARSPDIGVLHATAAATLLTRAVADDCPPSPASARKARARAQAMRLFAQRVRVATPHQLLRAAIAGPRYSSVL
LEQANALFVLDELHAYDPETFGRICAALGMWDHLGSRIAVLSATLAKPMIDLVEDSLGGHVDLVRAPAGTAPDRHRLVLD
EQPITAPDNLRAISRWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLHSRFKGRDRARIEHRITTRHPE
RSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQEESLDAA
WAAMRHTAAGAQAISEQTVEDWLDHVYSTPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARSLDENFDTVQVLHRD
DEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTLRLAVVDAPYDPLTGLGLDLENSPAGGAGPARRGG
TRETETVETIL
>Mature_810_residues
GRSATGRAELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAEGFQRQVRPRGTVWGERHEILS
LAYVNLLIGGPAEQDRLMAAAGVAFHHRSLTVSGGHGTGLAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAWF
TGELGSAPLPPDGRKLWEHARELFLATHDTWIDGVPANRGLLAVLLQGAVTLADHSGSAHVPLQRHMPLPRGFLHRLEQP
YGHQRAAAASGSHLILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCPEPGESS
EYPSTVVARSPDIGVLHATAAATLLTRAVADDCPPSPASARKARARAQAMRLFAQRVRVATPHQLLRAAIAGPRYSSVLL
EQANALFVLDELHAYDPETFGRICAALGMWDHLGSRIAVLSATLAKPMIDLVEDSLGGHVDLVRAPAGTAPDRHRLVLDE
QPITAPDNLRAISRWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLHSRFKGRDRARIEHRITTRHPER
SAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQEESLDAAW
AAMRHTAAGAQAISEQTVEDWLDHVYSTPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARSLDENFDTVQVLHRDD
EAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTLRLAVVDAPYDPLTGLGLDLENSPAGGAGPARRGGT
RETETVETIL

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=458, Percent_Identity=23.5807860262009, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 88389; Mature: 88258

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRSATGRAELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GFQRQVRPRGTVWGERHEILSLAYVNLLIGGPAEQDRLMAAAGVAFHHRSLTVSGGHGTG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECEEEEECCCCCC
LAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAWFTGELGSAPLPPDGRKLWEH
CCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHEEEEECCCCCCCCCCCCHHHHHHH
ARELFLATHDTWIDGVPANRGLLAVLLQGAVTLADHSGSAHVPLQRHMPLPRGFLHRLEQ
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCHHHCCCCCHHHHHHHCC
PYGHQRAAAASGSHLILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAA
CCCCHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
DRFTRDLDPPSDPCPEPGESSEYPSTVVARSPDIGVLHATAAATLLTRAVADDCPPSPAS
HHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHCCCCCCHH
ARKARARAQAMRLFAQRVRVATPHQLLRAAIAGPRYSSVLLEQANALFVLDELHAYDPET
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCEEEEEHHHHCCCHHH
FGRICAALGMWDHLGSRIAVLSATLAKPMIDLVEDSLGGHVDLVRAPAGTAPDRHRLVLD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC
EQPITAPDNLRAISRWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLHS
CCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
RFKGRDRARIEHRITTRHPERSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIEA
CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCEEEEHHEEEEEEEEECCCCHHHHHHHHH
VAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQEESLDAAWAAMRHTAAGAQAISEQTVE
HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DWLDHVYSTPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARSLDENFDTVQVLHRD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECC
DEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTLRLAVVDAPYDPLTG
CCHHHHEECCCCCCCCHHHCCEEEECCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC
LGLDLENSPAGGAGPARRGGTRETETVETIL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
GRSATGRAELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GFQRQVRPRGTVWGERHEILSLAYVNLLIGGPAEQDRLMAAAGVAFHHRSLTVSGGHGTG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECEEEEECCCCCC
LAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAWFTGELGSAPLPPDGRKLWEH
CCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHEEEEECCCCCCCCCCCCHHHHHHH
ARELFLATHDTWIDGVPANRGLLAVLLQGAVTLADHSGSAHVPLQRHMPLPRGFLHRLEQ
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCHHHCCCCCHHHHHHHCC
PYGHQRAAAASGSHLILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAA
CCCCHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
DRFTRDLDPPSDPCPEPGESSEYPSTVVARSPDIGVLHATAAATLLTRAVADDCPPSPAS
HHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHCCCCCCHH
ARKARARAQAMRLFAQRVRVATPHQLLRAAIAGPRYSSVLLEQANALFVLDELHAYDPET
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCEEEEEHHHHCCCHHH
FGRICAALGMWDHLGSRIAVLSATLAKPMIDLVEDSLGGHVDLVRAPAGTAPDRHRLVLD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC
EQPITAPDNLRAISRWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLHS
CCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
RFKGRDRARIEHRITTRHPERSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIEA
CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCEEEEHHEEEEEEEEECCCCHHHHHHHHH
VAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQEESLDAAWAAMRHTAAGAQAISEQTVE
HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DWLDHVYSTPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARSLDENFDTVQVLHRD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECC
DEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTLRLAVVDAPYDPLTG
CCHHHHEECCCCCCCCHHHCCEEEECCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC
LGLDLENSPAGGAGPARRGGTRETETVETIL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]