| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313151
Identifier: 158313151
GI number: 158313151
Start: 1569255
End: 1569662
Strand: Direct
Name: 158313151
Synonym: Franean1_1299
Alternate gene names: NA
Gene position: 1569255-1569662 (Clockwise)
Preceding gene: 158313149
Following gene: 158313155
Centisome position: 17.47
GC content: 69.61
Gene sequence:
>408_bases ATGTCGTCAGCCGTCACACTGCCTGCATGGACCGAAACGTCGAAGTACCTGTCACTGACCACCTTTCGCAGTGACGGGCG ATCCGTCTCGACGCCGGTGTGGTTCGTGGTCAACGGCGCCGAGCTGCTCGTTCTTACCGACGAAAAAAGCGGAAAGGTGC GCCGTCTGCGTGACTCCCCGCGGGCGACGGTCGCCCCGTGCGACGCCCGCGGAAAGGCGGCGGAGAGCCCGGTGGAGGTG ATGGCAGAGGTCGTCCCGGAACGTACCGGTGCCGCGCGGGCCATGGTGCGCCACCGTTACCGGGTCGCGGCGCCGCTGGT CTCGGCCATGTCGAAGGCGGCGCGCGCGGTGCGCCGGCGTCCGCCGGAGACCCAGACCGCCATCCGGATCACCCTGCCCG GCTGGTAG
Upstream 100 bases:
>100_bases GCGGTGAATCGGTCCGGCCGCGCGATTCGTGCCGGGGATCTTCCGGGCTTCTCCGCCACCCGGCGAGCGGCCCGGCCGCG GCCGGGCTACGGTTCCGCCC
Downstream 100 bases:
>100_bases CCGCACCCGCCACCCGCTGTTGGGGCGGCGGCCTCAAGTGCCGTGGACGCCGCCGAACATCGCCTCCGATCGCAGCCGCA GGCCGGCTGTCTGGTCCACG
Product: pyridoxamine 5'-phosphate oxidase-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MSSAVTLPAWTETSKYLSLTTFRSDGRSVSTPVWFVVNGAELLVLTDEKSGKVRRLRDSPRATVAPCDARGKAAESPVEV MAEVVPERTGAARAMVRHRYRVAAPLVSAMSKAARAVRRRPPETQTAIRITLPGW
Sequences:
>Translated_135_residues MSSAVTLPAWTETSKYLSLTTFRSDGRSVSTPVWFVVNGAELLVLTDEKSGKVRRLRDSPRATVAPCDARGKAAESPVEV MAEVVPERTGAARAMVRHRYRVAAPLVSAMSKAARAVRRRPPETQTAIRITLPGW >Mature_134_residues SSAVTLPAWTETSKYLSLTTFRSDGRSVSTPVWFVVNGAELLVLTDEKSGKVRRLRDSPRATVAPCDARGKAAESPVEVM AEVVPERTGAARAMVRHRYRVAAPLVSAMSKAARAVRRRPPETQTAIRITLPGW
Specific function: Unknown
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14747; Mature: 14616
Theoretical pI: Translated: 11.57; Mature: 11.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAVTLPAWTETSKYLSLTTFRSDGRSVSTPVWFVVNGAELLVLTDEKSGKVRRLRDSP CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCC RATVAPCDARGKAAESPVEVMAEVVPERTGAARAMVRHRYRVAAPLVSAMSKAARAVRRR CCEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PPETQTAIRITLPGW CCCCCEEEEEEECCC >Mature Secondary Structure SSAVTLPAWTETSKYLSLTTFRSDGRSVSTPVWFVVNGAELLVLTDEKSGKVRRLRDSP CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCEEECCCCC RATVAPCDARGKAAESPVEVMAEVVPERTGAARAMVRHRYRVAAPLVSAMSKAARAVRRR CCEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PPETQTAIRITLPGW CCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA