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The map label for this gene is rimM [H]

Identifier: 158313002

GI number: 158313002

Start: 1372292

End: 1372969

Strand: Direct

Name: rimM [H]

Synonym: Franean1_1150

Alternate gene names: 158313002

Gene position: 1372292-1372969 (Clockwise)

Preceding gene: 158313001

Following gene: 158313003

Centisome position: 15.28

GC content: 75.66

Gene sequence:

>678_bases
ATGGGCAGGCGGCCGCGTCCCATGGGTGAGCCTGTCGTCGTCGGGCGGGTCGGCCGTCCGCACGGCATCCGTGGCGACGT
GACCGTCGACGTCCGCACCGACCTGCCGGAGCGCCGTTTCGCGCCGGGGGCCCGCCTGGTTCGCCAGGTGGCCGATGGGC
CGGCCTCGCGGCCGGCCGCGGACGCCGCAGGTGCGGCTGATGCCGTCGGCACGGCGGCTGGTCCTGGCTCGGCGGGCGAT
TCCGGCGCCGCCCGGGCCGCCGGGCCGCCGGTCGCGACGGTGCTGTCCGTTGTGGCGTCCCGGTGGCATTCCGGCCGTCT
GCTGGTCCGCTTCGACGGGGTCACGGACCGTGACGCCGCCGAGGCGCTGCGGGGCAGCTTCCTCACCATCGACTCCGACG
AGTGCGGCCCGGCGGTCGACCCCGATGACGAGGACGACGACGGCGAGCTGTGGTGGGATCGCGACCTGGTCGGCCTGCAC
GCGCGCACGCCCGCCGGGGACGTCCTCGGTGAGGTCGTCGACGTCATCCATTCCCCGGGCGGGGAGATCCTCGCGATCGG
CCGTCCCGAGGGCGGGGAGTACCTGGTGCCGTTCGTCCGGGAGATCGTGCCCACCGTCGACCCGGCGGCGGGGCACATCG
TGGTGGACCCGCCTCCCGGCCTGCTCGACCTCGACTGA

Upstream 100 bases:

>100_bases
CACCGTGATGGGCGGTGTGGGCGGTCGCGGTCTGCGGATCGACGTCGTCGACGTGGACCGGTAGCCGTGTGCACTCATCG
CCTCCGTGCCCATCGCCTCC

Downstream 100 bases:

>100_bases
TTCGGCGCTCCCGCCCGGCCGGCGCTCCCGGCTCCGTCACCGCCCCACCTCGCCACCGCCCCCGCTCCGCCACCGCCCCG
TTTCGAGGCGCCGCCCACCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MGRRPRPMGEPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAADAAGAADAVGTAAGPGSAGD
SGAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAAEALRGSFLTIDSDECGPAVDPDDEDDDGELWWDRDLVGLH
ARTPAGDVLGEVVDVIHSPGGEILAIGRPEGGEYLVPFVREIVPTVDPAAGHIVVDPPPGLLDLD

Sequences:

>Translated_225_residues
MGRRPRPMGEPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAADAAGAADAVGTAAGPGSAGD
SGAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAAEALRGSFLTIDSDECGPAVDPDDEDDDGELWWDRDLVGLH
ARTPAGDVLGEVVDVIHSPGGEILAIGRPEGGEYLVPFVREIVPTVDPAAGHIVVDPPPGLLDLD
>Mature_224_residues
GRRPRPMGEPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAADAAGAADAVGTAAGPGSAGDS
GAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAAEALRGSFLTIDSDECGPAVDPDDEDDDGELWWDRDLVGLHA
RTPAGDVLGEVVDVIHSPGGEILAIGRPEGGEYLVPFVREIVPTVDPAAGHIVVDPPPGLLDLD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 23237; Mature: 23106

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRPRPMGEPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAA
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHCCCHHHHHHHHHCCCCCCCCC
DAAGAADAVGTAAGPGSAGDSGAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAA
HHCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
EALRGSFLTIDSDECGPAVDPDDEDDDGELWWDRDLVGLHARTPAGDVLGEVVDVIHSPG
HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHCCC
GEILAIGRPEGGEYLVPFVREIVPTVDPAAGHIVVDPPPGLLDLD
CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCEECC
>Mature Secondary Structure 
GRRPRPMGEPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAA
CCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHCCCHHHHHHHHHCCCCCCCCC
DAAGAADAVGTAAGPGSAGDSGAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAA
HHCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
EALRGSFLTIDSDECGPAVDPDDEDDDGELWWDRDLVGLHARTPAGDVLGEVVDVIHSPG
HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHCCC
GEILAIGRPEGGEYLVPFVREIVPTVDPAAGHIVVDPPPGLLDLD
CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA