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The map label for this gene is ycdM [C]

Identifier: 158312852

GI number: 158312852

Start: 1178111

End: 1178983

Strand: Direct

Name: ycdM [C]

Synonym: Franean1_0998

Alternate gene names: 158312852

Gene position: 1178111-1178983 (Clockwise)

Preceding gene: 158312848

Following gene: 158312854

Centisome position: 13.12

GC content: 69.64

Gene sequence:

>873_bases
GTGCGACTTGGTGTACAGATTCCCGACTTCACCCGGCCCGAGGGGCCTGCCGACCTGGGCCGCGCGCTCGCCGAGGTCGC
CCGTGAGGTCGACGAGGCCGGCTTCGACTACCTGGCGGTGATGGACCACTTCTTCCAGATCGAGATGGTCGGCCCGCCCG
AGAACGACATGCTCGAGGCCTACACCACCCTGGGCTTCCTGGCGGCGCACACCCGCCGGGCGACCCTGCTGACTCTGGTG
ACCGGCACCGTCTACCGGGAGCCCGGAATTCTTGCGAAGATCATCAGTACCCTCGACGTGCTTTCCGGGGGCCGGGCGAT
GCTCGGAATCGGCGCGGCGTGGAACGAGCAGGAGTCCGTCGGGCTCGGCATCCCGTTCCCCCCGGTCGCCGAGCGCTTCG
AGCGCCTCGAGGAGACCCTGCAGATCTGTCTTCGGATGTGGTCGGACGACGAGAGCCCCTGGACGGGCAAGCACTACCAG
CTCGCCCGGCCGCTCAACTCGCCCGCCGCGCTCACCCGGCCGCACCCGCCGATCATGATCGGCGGGGGTGGGGAGAAGAA
GACGCTGCGCCTGGTCGCGAAGTACGGGCAGGCCTGCAACCTCTTCTCCGGCCCTGACCTGCCGCACAAGCTCGACGTCC
TGCGCCGGCACTGCGACGCCGAGGGCCGCGACTACGACGAGATCGTCAAGACCTGCTACTACCGCTTCGACCCGGGCAAG
TCGGGCGAGAACGTCGGGCGCATCCTCGACGAGCTCGGCGAACTGGCCGAGCTCGGCATCTCGGTGGCCATCGGCGGCGT
CGCCGACATCTGGGACGTCGAGCCGCTGCGGGTCCTGGGCGAGCGGGTCGTCCCCGCCGCCGCGGACATCTGA

Upstream 100 bases:

>100_bases
TGTCCCGCCGATGCGGGAACGTCGCCGGGTGGGGCGGACGTCCACCGGACATGGTCGCGGGAGACGCGGCCCGCGGTGAG
CTCCCGGAGGAGAAAAAGAA

Downstream 100 bases:

>100_bases
GGCCGGCGGCGGCCGGCGTCGGCGGGGTTCGTGTCCGTGCCGGCGCCGGCGGGCTCGGCGGCCCGCCGGCGCCGGTGCGC
GGACCTGTCGGATCAGTCCT

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MRLGVQIPDFTRPEGPADLGRALAEVAREVDEAGFDYLAVMDHFFQIEMVGPPENDMLEAYTTLGFLAAHTRRATLLTLV
TGTVYREPGILAKIISTLDVLSGGRAMLGIGAAWNEQESVGLGIPFPPVAERFERLEETLQICLRMWSDDESPWTGKHYQ
LARPLNSPAALTRPHPPIMIGGGGEKKTLRLVAKYGQACNLFSGPDLPHKLDVLRRHCDAEGRDYDEIVKTCYYRFDPGK
SGENVGRILDELGELAELGISVAIGGVADIWDVEPLRVLGERVVPAAADI

Sequences:

>Translated_290_residues
MRLGVQIPDFTRPEGPADLGRALAEVAREVDEAGFDYLAVMDHFFQIEMVGPPENDMLEAYTTLGFLAAHTRRATLLTLV
TGTVYREPGILAKIISTLDVLSGGRAMLGIGAAWNEQESVGLGIPFPPVAERFERLEETLQICLRMWSDDESPWTGKHYQ
LARPLNSPAALTRPHPPIMIGGGGEKKTLRLVAKYGQACNLFSGPDLPHKLDVLRRHCDAEGRDYDEIVKTCYYRFDPGK
SGENVGRILDELGELAELGISVAIGGVADIWDVEPLRVLGERVVPAAADI
>Mature_290_residues
MRLGVQIPDFTRPEGPADLGRALAEVAREVDEAGFDYLAVMDHFFQIEMVGPPENDMLEAYTTLGFLAAHTRRATLLTLV
TGTVYREPGILAKIISTLDVLSGGRAMLGIGAAWNEQESVGLGIPFPPVAERFERLEETLQICLRMWSDDESPWTGKHYQ
LARPLNSPAALTRPHPPIMIGGGGEKKTLRLVAKYGQACNLFSGPDLPHKLDVLRRHCDAEGRDYDEIVKTCYYRFDPGK
SGENVGRILDELGELAELGISVAIGGVADIWDVEPLRVLGERVVPAAADI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 31777; Mature: 31777

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGVQIPDFTRPEGPADLGRALAEVAREVDEAGFDYLAVMDHFFQIEMVGPPENDMLEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCHHHHHH
YTTLGFLAAHTRRATLLTLVTGTVYREPGILAKIISTLDVLSGGRAMLGIGAAWNEQESV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
GLGIPFPPVAERFERLEETLQICLRMWSDDESPWTGKHYQLARPLNSPAALTRPHPPIMI
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEE
GGGGEKKTLRLVAKYGQACNLFSGPDLPHKLDVLRRHCDAEGRDYDEIVKTCYYRFDPGK
CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
SGENVGRILDELGELAELGISVAIGGVADIWDVEPLRVLGERVVPAAADI
CCCHHHHHHHHHHHHHHCCHHHEECCCHHHCCCCHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MRLGVQIPDFTRPEGPADLGRALAEVAREVDEAGFDYLAVMDHFFQIEMVGPPENDMLEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCHHHHHH
YTTLGFLAAHTRRATLLTLVTGTVYREPGILAKIISTLDVLSGGRAMLGIGAAWNEQESV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
GLGIPFPPVAERFERLEETLQICLRMWSDDESPWTGKHYQLARPLNSPAALTRPHPPIMI
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEE
GGGGEKKTLRLVAKYGQACNLFSGPDLPHKLDVLRRHCDAEGRDYDEIVKTCYYRFDPGK
CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
SGENVGRILDELGELAELGISVAIGGVADIWDVEPLRVLGERVVPAAADI
CCCHHHHHHHHHHHHHHCCHHHEECCCHHHCCCCHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]