| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is maeB [C]
Identifier: 158312834
GI number: 158312834
Start: 1144172
End: 1145566
Strand: Direct
Name: maeB [C]
Synonym: Franean1_0980
Alternate gene names: 158312834
Gene position: 1144172-1145566 (Clockwise)
Preceding gene: 158312832
Following gene: 158312836
Centisome position: 12.74
GC content: 72.47
Gene sequence:
>1395_bases GTGCCCGCCGCCCCGCGAACGCCCGATCTTCGCCGGGGCCCCGGGAACGTCCAGCCACGTCCGGTCAGTGACACCGTTCG CCGGACGGAACCGCCGTGGCTTGTCCGAGGAGCCCCTTTCGTGACCGCAACCACAGACCACACGACCCTCGACTCGTCCC TCGCGGCCCCGACCGATGGGCCCGTCTCGCCCGCGGCACCGGTGACGTCGCCGGGGTTCGACGGGCCGAGCCCGCGCCCG TCCGACGACGACCCCGCCTTCGCGCTGCACCGGGGCGGGAAGATCGGAATCGGGCTGACCGCACCTCTGAACAACCGCGA GGACCTCTCGCTCGCCTACACCCCCGGCGTGGCCCGGGTGTGCACGGCGATCGCCGAGACGCCGGCCCTGGCCGACGAGT ACACCTGGCGTTCCAACACCGTGATCGTGGTGACCGACGGAACGGCCGTCCTGGGCCTCGGTGACATCGGCCCCGCGGCC GCCCTGCCGGTCATGGAGGGCAAGGCCGCCCTCTTCAAGCACTTCGGCGGGGTCGACGCCGTGCCGATCTGCCTCGACTG CACCGACGTCGAGGAGATCGTCGACACGGTCGCCCGCCTCGCCCCGGGCTTCGGTGGCGTCAACCTCGAGGACATCTCGG CCCCCCGGTGCTTCGCGATCGAGTCGATGCTCCAGGACCGCGTCGACATCCCCGTCTTCCACGACGACCAGCACGGCACC GCGATCGTCGCGCTCGCCGCGCTGGAGAACGCCGCCCGGCTGACCGGGCGGACCCTCGGCGACCTGCGGGCCGTCGTGTC AGGCGCCGGCGCCGCCGGTGTGGCCGTCACCCGCATCCTGCTCGCCGCCGGCATCGGTGACATCGCCGTCGGCGACAGTC GCGGCATGATCTACCCTGGTCGGGACGGCCTGACGACGGTCAAGGCCGCCCTCGCCGCCGAGACGAACAAGGCCGGCCTG CGCGGCTCGATCAACGAGGCACTTGCCGGGGCGGACGTCTACCTCGGCCTCTCCGCGGGCAAGGTGCCCGAGGAGGCCGT CGCCACGATGGCACCGGAGGCGATCGTCTTCGCGATGGCGAACCCGGACCCGGAGATCGACCCCGAGATCGCCCACAAGT ACGCCCGGATCGTGGCGACCGGCCGCAGCGACTACCCGAACCAGATCAACAACGTGCTGGCCTTCCCGGGCGTCTTCCGG GGCGCGCTGGACGTGCGTGCCAGCCGGGTCACCGAGGGCATGAAGCTCGCGGCCGCCCGGGCTCTCGCCGACGTGATCGC CGACGAGCTGGCCGATGACAACATCATCCCGAGCGTCTTCGATGAGCGCGTCGCGCCCGCGGTCTCGACCGCGGTTGCCG CGGCAGCCCGCGCCGACGGAGTCGCACGCCGCTAG
Upstream 100 bases:
>100_bases GCCCGGAGCCTCGCGCGTGCCATATTGGAAGCAGCGCCGGGCCACCCCCGTCGCAGGCATGTGGCAGTCCAGCCATCTCA CACGTCGAGGTGGCGCAGCA
Downstream 100 bases:
>100_bases CACCTCCGCCGCGGCAGGGCTCGGGTCGTCCGGAGCGCTGCGGGCAGGGAAAGACAGAGCCGAACGCGACCGCCGCGGAA CCTCAGGGTTCCGCGGCGGT
Product: malate dehydrogenase
Products: NA
Alternate protein names: NAD-ME [H]
Number of amino acids: Translated: 464; Mature: 463
Protein sequence:
>464_residues MPAAPRTPDLRRGPGNVQPRPVSDTVRRTEPPWLVRGAPFVTATTDHTTLDSSLAAPTDGPVSPAAPVTSPGFDGPSPRP SDDDPAFALHRGGKIGIGLTAPLNNREDLSLAYTPGVARVCTAIAETPALADEYTWRSNTVIVVTDGTAVLGLGDIGPAA ALPVMEGKAALFKHFGGVDAVPICLDCTDVEEIVDTVARLAPGFGGVNLEDISAPRCFAIESMLQDRVDIPVFHDDQHGT AIVALAALENAARLTGRTLGDLRAVVSGAGAAGVAVTRILLAAGIGDIAVGDSRGMIYPGRDGLTTVKAALAAETNKAGL RGSINEALAGADVYLGLSAGKVPEEAVATMAPEAIVFAMANPDPEIDPEIAHKYARIVATGRSDYPNQINNVLAFPGVFR GALDVRASRVTEGMKLAAARALADVIADELADDNIIPSVFDERVAPAVSTAVAAAARADGVARR
Sequences:
>Translated_464_residues MPAAPRTPDLRRGPGNVQPRPVSDTVRRTEPPWLVRGAPFVTATTDHTTLDSSLAAPTDGPVSPAAPVTSPGFDGPSPRP SDDDPAFALHRGGKIGIGLTAPLNNREDLSLAYTPGVARVCTAIAETPALADEYTWRSNTVIVVTDGTAVLGLGDIGPAA ALPVMEGKAALFKHFGGVDAVPICLDCTDVEEIVDTVARLAPGFGGVNLEDISAPRCFAIESMLQDRVDIPVFHDDQHGT AIVALAALENAARLTGRTLGDLRAVVSGAGAAGVAVTRILLAAGIGDIAVGDSRGMIYPGRDGLTTVKAALAAETNKAGL RGSINEALAGADVYLGLSAGKVPEEAVATMAPEAIVFAMANPDPEIDPEIAHKYARIVATGRSDYPNQINNVLAFPGVFR GALDVRASRVTEGMKLAAARALADVIADELADDNIIPSVFDERVAPAVSTAVAAAARADGVARR >Mature_463_residues PAAPRTPDLRRGPGNVQPRPVSDTVRRTEPPWLVRGAPFVTATTDHTTLDSSLAAPTDGPVSPAAPVTSPGFDGPSPRPS DDDPAFALHRGGKIGIGLTAPLNNREDLSLAYTPGVARVCTAIAETPALADEYTWRSNTVIVVTDGTAVLGLGDIGPAAA LPVMEGKAALFKHFGGVDAVPICLDCTDVEEIVDTVARLAPGFGGVNLEDISAPRCFAIESMLQDRVDIPVFHDDQHGTA IVALAALENAARLTGRTLGDLRAVVSGAGAAGVAVTRILLAAGIGDIAVGDSRGMIYPGRDGLTTVKAALAAETNKAGLR GSINEALAGADVYLGLSAGKVPEEAVATMAPEAIVFAMANPDPEIDPEIAHKYARIVATGRSDYPNQINNVLAFPGVFRG ALDVRASRVTEGMKLAAARALADVIADELADDNIIPSVFDERVAPAVSTAVAAAARADGVARR
Specific function: In addition to the NAD-dependent oxidative decarboxylation of L-malate, the enzyme catalyzes the decarboxylation of oxaloacetate [H]
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malic enzymes family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=361, Percent_Identity=27.1468144044321, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI62420882, Length=371, Percent_Identity=25.6064690026954, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI62420880, Length=371, Percent_Identity=25.6064690026954, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI239049447, Length=371, Percent_Identity=25.6064690026954, Blast_Score=79, Evalue=8e-15, Organism=Escherichia coli, GI1788806, Length=394, Percent_Identity=48.4771573604061, Blast_Score=331, Evalue=5e-92, Organism=Caenorhabditis elegans, GI17537199, Length=410, Percent_Identity=24.6341463414634, Blast_Score=77, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322823, Length=346, Percent_Identity=25.7225433526012, Blast_Score=80, Evalue=6e-16, Organism=Drosophila melanogaster, GI24646388, Length=382, Percent_Identity=29.3193717277487, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24646386, Length=382, Percent_Identity=29.3193717277487, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI281363505, Length=419, Percent_Identity=26.7303102625298, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI78707236, Length=419, Percent_Identity=26.7303102625298, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI281363503, Length=419, Percent_Identity=26.7303102625298, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI78707232, Length=419, Percent_Identity=26.7303102625298, Blast_Score=83, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR001891 - InterPro: IPR016040 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M [H]
EC number: =1.1.1.38 [H]
Molecular weight: Translated: 47751; Mature: 47620
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAAPRTPDLRRGPGNVQPRPVSDTVRRTEPPWLVRGAPFVTATTDHTTLDSSLAAPTDG CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCC PVSPAAPVTSPGFDGPSPRPSDDDPAFALHRGGKIGIGLTAPLNNREDLSLAYTPGVARV CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCEEEECCCHHHH CTAIAETPALADEYTWRSNTVIVVTDGTAVLGLGDIGPAAALPVMEGKAALFKHFGGVDA HHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHCCCCCCCHHHHHHHCCCCCC VPICLDCTDVEEIVDTVARLAPGFGGVNLEDISAPRCFAIESMLQDRVDIPVFHDDQHGT EEEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCC AIVALAALENAARLTGRTLGDLRAVVSGAGAAGVAVTRILLAAGIGDIAVGDSRGMIYPG EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCEEECC RDGLTTVKAALAAETNKAGLRGSINEALAGADVYLGLSAGKVPEEAVATMAPEAIVFAMA CCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHCCCCEEEEEEC NPDPEIDPEIAHKYARIVATGRSDYPNQINNVLAFPGVFRGALDVRASRVTEGMKLAAAR CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH ALADVIADELADDNIIPSVFDERVAPAVSTAVAAAARADGVARR HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PAAPRTPDLRRGPGNVQPRPVSDTVRRTEPPWLVRGAPFVTATTDHTTLDSSLAAPTDG CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCC PVSPAAPVTSPGFDGPSPRPSDDDPAFALHRGGKIGIGLTAPLNNREDLSLAYTPGVARV CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCEEEECCCHHHH CTAIAETPALADEYTWRSNTVIVVTDGTAVLGLGDIGPAAALPVMEGKAALFKHFGGVDA HHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHCCCCCCCHHHHHHHCCCCCC VPICLDCTDVEEIVDTVARLAPGFGGVNLEDISAPRCFAIESMLQDRVDIPVFHDDQHGT EEEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCC AIVALAALENAARLTGRTLGDLRAVVSGAGAAGVAVTRILLAAGIGDIAVGDSRGMIYPG EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCEEECC RDGLTTVKAALAAETNKAGLRGSINEALAGADVYLGLSAGKVPEEAVATMAPEAIVFAMA CCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHCCCCEEEEEEC NPDPEIDPEIAHKYARIVATGRSDYPNQINNVLAFPGVFRGALDVRASRVTEGMKLAAAR CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH ALADVIADELADDNIIPSVFDERVAPAVSTAVAAAARADGVARR HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2644282 [H]