| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is mhpC [C]
Identifier: 158312806
GI number: 158312806
Start: 1116154
End: 1117206
Strand: Direct
Name: mhpC [C]
Synonym: Franean1_0952
Alternate gene names: 158312806
Gene position: 1116154-1117206 (Clockwise)
Preceding gene: 158312805
Following gene: 158312807
Centisome position: 12.43
GC content: 75.02
Gene sequence:
>1053_bases GTGGCGGTGACGGACGGCGGGCAAGCGGCGGGGCACAGGGCCGGCGCCGGGGACAGGACCGAGGCCGCGGCTCCGGCTCC GGATGCGGGTGCGGCCGGGACCGCGGCCGCGCGGGCTTCCGGTGGGCCGGGGCGGCGGCTGTCCACCCGGTTCGTGACGG TCCACGGTTACCGGCGGGCCTATCTCCGGGCCGGTCGTGGTCCGGCCCTGCTGCTGATCCACGGCATCGGGGACAATTCG GGAACCTGGCGGGACCTCATCCCGGAGCTGGCGCGCGGCCGCACCGTCATCGCGCCGGATCTGCTGGGCCACGGCCGCTC CGACAAGCCCCGGGGCGACTATTCGATCGCCGGCTACGCCTGCGGGATGCGCGACCTGCTGACCGTCCTGGGCGTCGAGC GGGCGACGGTGGTCGGCCACTCGCTGGGCGGCGGAGTGGCGATGCAGTTCGCCTACCAGTTCCCCGAGCGGTGCGAGCGG CTCGTCCTGGTGTCGACCGGGGGTGTGGGGCCGGACCTGCACCCGGTGCTGCGGGCGGCGACGGTGCCGGGCTCGGGCCA TGCGCTGTCGCTGCTGACCAGAGCGCCCGTGCGCCGGGTCGGCTGGGCGGCCACCCGCGCGCTGCGGCTGCTGCACACCG ACGTCGGGCGGGACGCGGACGACCTGATGCGCGTGTTCGCCTCGCTGGACGTCCCCACGGCCCGGCAGGCCTTCCTGCGC ACCCTGCGCTCGGCGGTGGACGGCCACGGCCAGGCGATCACGATGCTGGACCGGTGCTACCTGGCGGCAGGCATGCCCTC GCTGATCGTGTGGGGGGCGCACGACGCGGCGATCCCGGTGGAGCACGCGAGGATCGCCCACGAGGCGATGCCGGGCAGCC GGCTGGAGATCTTCCCGGACGCGGGCCATTTCCCCCACCACGCGGACCCGGTGCGATTCCGGGCCGTTCTCGAGGATTTT CTGGCGACCACCAGACCGGCCAGCCACTCCGCCCGCCAGTGGCGCACCCTGCTGCGTTCCCACGGCACGGCGGCACCCGC ACAGGACGACTGA
Upstream 100 bases:
>100_bases AGAAGAGCGGTTACGGAAAGGACCTGTCGGTCTACGGGCTGGAGGACTACACCCGTATCAAGCACGTGATGCACAACATC GAGTTCTAGGGTCGGTGGCG
Downstream 100 bases:
>100_bases TCCGCCGCCGGTCGCGCCCCGGGCGGCCGGTCGGTCCCGTGGCACCGGATGAAGGGATACCGCCACAGGTGACCTCCGCC GCCCGGGCCGGCGCGATCCG
Product: alpha/beta hydrolase fold protein
Products: 2-oxopent-4-enoate; succinate [C]
Alternate protein names: NA
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MAVTDGGQAAGHRAGAGDRTEAAAPAPDAGAAGTAAARASGGPGRRLSTRFVTVHGYRRAYLRAGRGPALLLIHGIGDNS GTWRDLIPELARGRTVIAPDLLGHGRSDKPRGDYSIAGYACGMRDLLTVLGVERATVVGHSLGGGVAMQFAYQFPERCER LVLVSTGGVGPDLHPVLRAATVPGSGHALSLLTRAPVRRVGWAATRALRLLHTDVGRDADDLMRVFASLDVPTARQAFLR TLRSAVDGHGQAITMLDRCYLAAGMPSLIVWGAHDAAIPVEHARIAHEAMPGSRLEIFPDAGHFPHHADPVRFRAVLEDF LATTRPASHSARQWRTLLRSHGTAAPAQDD
Sequences:
>Translated_350_residues MAVTDGGQAAGHRAGAGDRTEAAAPAPDAGAAGTAAARASGGPGRRLSTRFVTVHGYRRAYLRAGRGPALLLIHGIGDNS GTWRDLIPELARGRTVIAPDLLGHGRSDKPRGDYSIAGYACGMRDLLTVLGVERATVVGHSLGGGVAMQFAYQFPERCER LVLVSTGGVGPDLHPVLRAATVPGSGHALSLLTRAPVRRVGWAATRALRLLHTDVGRDADDLMRVFASLDVPTARQAFLR TLRSAVDGHGQAITMLDRCYLAAGMPSLIVWGAHDAAIPVEHARIAHEAMPGSRLEIFPDAGHFPHHADPVRFRAVLEDF LATTRPASHSARQWRTLLRSHGTAAPAQDD >Mature_349_residues AVTDGGQAAGHRAGAGDRTEAAAPAPDAGAAGTAAARASGGPGRRLSTRFVTVHGYRRAYLRAGRGPALLLIHGIGDNSG TWRDLIPELARGRTVIAPDLLGHGRSDKPRGDYSIAGYACGMRDLLTVLGVERATVVGHSLGGGVAMQFAYQFPERCERL VLVSTGGVGPDLHPVLRAATVPGSGHALSLLTRAPVRRVGWAATRALRLLHTDVGRDADDLMRVFASLDVPTARQAFLRT LRSAVDGHGQAITMLDRCYLAAGMPSLIVWGAHDAAIPVEHARIAHEAMPGSRLEIFPDAGHFPHHADPVRFRAVLEDFL ATTRPASHSARQWRTLLRSHGTAAPAQDD
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dmpD/todF/xylF esterase family [H]
Homologues:
Organism=Homo sapiens, GI218777840, Length=279, Percent_Identity=25.4480286738351, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI13376164, Length=279, Percent_Identity=25.4480286738351, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI145611434, Length=260, Percent_Identity=25, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI23200012, Length=259, Percent_Identity=27.7992277992278, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI23200008, Length=259, Percent_Identity=27.7992277992278, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1787244, Length=260, Percent_Identity=28.4615384615385, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789817, Length=253, Percent_Identity=28.0632411067194, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17554012, Length=295, Percent_Identity=23.0508474576271, Blast_Score=86, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: 3.7.1.- [C]
Molecular weight: Translated: 37013; Mature: 36881
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVTDGGQAAGHRAGAGDRTEAAAPAPDAGAAGTAAARASGGPGRRLSTRFVTVHGYRRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEECHHHH YLRAGRGPALLLIHGIGDNSGTWRDLIPELARGRTVIAPDLLGHGRSDKPRGDYSIAGYA HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCEEHHHH CGMRDLLTVLGVERATVVGHSLGGGVAMQFAYQFPERCERLVLVSTGGVGPDLHPVLRAA CCHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH TVPGSGHALSLLTRAPVRRVGWAATRALRLLHTDVGRDADDLMRVFASLDVPTARQAFLR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH TLRSAVDGHGQAITMLDRCYLAAGMPSLIVWGAHDAAIPVEHARIAHEAMPGSRLEIFPD HHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCC AGHFPHHADPVRFRAVLEDFLATTRPASHSARQWRTLLRSHGTAAPAQDD CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AVTDGGQAAGHRAGAGDRTEAAAPAPDAGAAGTAAARASGGPGRRLSTRFVTVHGYRRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEECHHHH YLRAGRGPALLLIHGIGDNSGTWRDLIPELARGRTVIAPDLLGHGRSDKPRGDYSIAGYA HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCEEHHHH CGMRDLLTVLGVERATVVGHSLGGGVAMQFAYQFPERCERLVLVSTGGVGPDLHPVLRAA CCHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH TVPGSGHALSLLTRAPVRRVGWAATRALRLLHTDVGRDADDLMRVFASLDVPTARQAFLR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH TLRSAVDGHGQAITMLDRCYLAAGMPSLIVWGAHDAAIPVEHARIAHEAMPGSRLEIFPD HHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCC AGHFPHHADPVRFRAVLEDFLATTRPASHSARQWRTLLRSHGTAAPAQDD CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2-hydroxy-6-ketononadienedicarboxylate; H2O [C]
Specific reaction: 2-hydroxy-6-ketononadienedicarboxylate + H2O = 2-oxopent-4-enoate + succinate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]