| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312648
Identifier: 158312648
GI number: 158312648
Start: 922916
End: 924508
Strand: Direct
Name: 158312648
Synonym: Franean1_0792
Alternate gene names: NA
Gene position: 922916-924508 (Clockwise)
Preceding gene: 158312647
Following gene: 158312651
Centisome position: 10.28
GC content: 71.81
Gene sequence:
>1593_bases ATGAGCCGCTCCTCTCAGCAGGGCACGGAGTCCGGCCGGGCCCCATCAGCCCCGTCGCTGATCCGCATCCTGAAGCCGCG GTGGATGGTGATCGCCATCTCGGTGGTCATCCTGGCCGCGCTGGCGATGATCATATCCAAGCAGCAGGCGGCGACGTTCC AGGCGAGTTCGCGCATCTTCCTGGACACCTCGGACCAGACCCTTGGCGCGAACTCGGTCGACGCGGGCCGCTTCGTGCAG ACCCAGGCCCAGCTCGCGACCTCGACAGCGACTCTGGACGAGATCGCTGCCAAGCTGAAGATCACCCGGGCTGACGTCGC GGACCGCCTGACGACGACCCCGTCGGACGAGGGGTACTTCTTCACGATCACCGGTACCGGCACCAGCGAGCAGGCCGCGA TCGACTTCGTCAACGCCGCGACGGCCGCCTACACCTCCCAGCTCGGGAAGTCCGGCGCCGGTGACGAGACGTTGGTCGAC ACGCTCACCAGGATCCGGAACGAGAAGGCAACCCAGCTCCAGGGCCTCGACCAGCAGGCCCAGACCCAGGAAGGCGGGGC ATCGGACCCCGGGCTGACGAACCAGCGTCTCGTGCTCCAGGACGAGGTGAAGGCGCTCAACACCCGGATCACCGAGGCTG GTGTGAACGTCGCCGCGGCGCCCACCACGATCCGGCTCGCCGAACCGTCGCGGTCGGAGGGTCAGGTCGCGCCGAGCCTG TTCCGTAACGTCCTCGTCGCCGCGTTGCTCGGTCTGTTCGGCTCCGCGGCCGGGCTCTGGATCATGTACCAGCGGCGCCC GACCATCCTCGACCCGCACAACTCGGCGGACCTGATGGGCGTGCCGCTCATCGCGGACCTGCCGGCGAGCCGGACGAGCG CGAACGCGGCGGAGACACTGGTATCGGCCATGTCGGCGGTGATGTCACCCACCAGCAAGGTGGTGGCCTTCACCCCGGCG TCCCGGACGGACCTCAGTTCCGAGCTGGTCGCCGCCGTCGCCGCCGCCTGGTCGGACGACCAGGGCGTGGTGCTGATCCT CGACACCTCGGCGCAGTCGGAGGTCCGCGCGTCGCTGGAGGGGCTGCCCCGGCCCACCTCGGCCGAGCTGCCCCGCTGGG CGCACGAGCCGACCTGCCTGGCCCGCTCCTCGGGGACGGGCCGCGGCCACATCCTCTACAACCGGGTCTCGCCGGCCCGG GCCGCCCGCCCGGGGGGCCTCGCGCCCATCCTGGCCGACCGCGCGCCTGTGGTGGACCTCGTCATCCTCGTCACCGCCGC GCTCGCGGACCTGCCGATGACCGCCGCCTCGGCGATCCAGGCGGACGCCGTCGTCGTCATCACCTCACCCGACACCAACC TCAAGGAGCTCGAGCAGGTGCCGCGCGACTGGCCGGCCCTGGCCGAGCGGGTCGTGGGTGTCGTGCACGACGGCCGCACC GCGGTGCGCCGCAACGCGGGTGGCGGGCGCGGCTCGTCGCAGGCCGCGGTCGAGTCGATCACCTCCGCCTCACCGGTGGG CGGCGAGGCGGCCAGCCGCGCCCCCCGTGACACCGAGGCAACGGACCGCTACGCGCGTCCCGCGAAGCGCTGA
Upstream 100 bases:
>100_bases CTCCGCTTCACCTGCCGCCCAAAGGGCTTGCGTCAGCGTTCGCCCAGCTGCGGCTGACCGGCACCTCGCCACGCGCCTGG CGCCCTGAGGCGGGCGCCGC
Downstream 100 bases:
>100_bases GTCAGGCACTGACGGCAGCAGGCAACACAGACACCACAGAGCCGGCCGCCGCCCCGAGGTACGAAGGACGGGCGGCGGTC AGGCCCCGCCAGGCACGGCA
Product: lipopolysaccharide biosynthesis protein
Products: NA
Alternate protein names: Lipopolysaccharide Biosynthesis
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MSRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIFLDTSDQTLGANSVDAGRFVQ TQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYFFTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVD TLTRIRNEKATQLQGLDQQAQTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETLVSAMSAVMSPTSKVVAFTPA SRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLEGLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPAR AARPGGLAPILADRAPVVDLVILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR
Sequences:
>Translated_530_residues MSRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIFLDTSDQTLGANSVDAGRFVQ TQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYFFTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVD TLTRIRNEKATQLQGLDQQAQTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETLVSAMSAVMSPTSKVVAFTPA SRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLEGLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPAR AARPGGLAPILADRAPVVDLVILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR >Mature_529_residues SRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIFLDTSDQTLGANSVDAGRFVQT QAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYFFTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVDT LTRIRNEKATQLQGLDQQAQTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSLF RNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETLVSAMSAVMSPTSKVVAFTPAS RTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLEGLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPARA ARPGGLAPILADRAPVVDLVILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRTA VRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55367; Mature: 55236
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIF CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LDTSDQTLGANSVDAGRFVQTQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYF EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE FTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVDTLTRIRNEKATQLQGLDQQA EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHH QTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL HHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCHHH FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETL HHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCCCEEECCCCCCCCHHHHHHH VSAMSAVMSPTSKVVAFTPASRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLE HHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH GLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPARAARPGGLAPILADRAPVVDL CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCCCHHHHCCCCHHHH VILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT HHHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHH AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR HHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure SRSSQQGTESGRAPSAPSLIRILKPRWMVIAISVVILAALAMIISKQQAATFQASSRIF CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LDTSDQTLGANSVDAGRFVQTQAQLATSTATLDEIAAKLKITRADVADRLTTTPSDEGYF EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE FTITGTGTSEQAAIDFVNAATAAYTSQLGKSGAGDETLVDTLTRIRNEKATQLQGLDQQA EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHH QTQEGGASDPGLTNQRLVLQDEVKALNTRITEAGVNVAAAPTTIRLAEPSRSEGQVAPSL HHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCHHH FRNVLVAALLGLFGSAAGLWIMYQRRPTILDPHNSADLMGVPLIADLPASRTSANAAETL HHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCCCEEECCCCCCCCHHHHHHH VSAMSAVMSPTSKVVAFTPASRTDLSSELVAAVAAAWSDDQGVVLILDTSAQSEVRASLE HHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH GLPRPTSAELPRWAHEPTCLARSSGTGRGHILYNRVSPARAARPGGLAPILADRAPVVDL CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCCCHHHHCCCCHHHH VILVTAALADLPMTAASAIQADAVVVITSPDTNLKELEQVPRDWPALAERVVGVVHDGRT HHHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHH AVRRNAGGGRGSSQAAVESITSASPVGGEAASRAPRDTEATDRYARPAKR HHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA