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The map label for this gene is msmR [H]

Identifier: 158312573

GI number: 158312573

Start: 834159

End: 834980

Strand: Direct

Name: msmR [H]

Synonym: Franean1_0717

Alternate gene names: 158312573

Gene position: 834159-834980 (Clockwise)

Preceding gene: 158312564

Following gene: 158312574

Centisome position: 9.29

GC content: 72.75

Gene sequence:

>822_bases
ATGGTCGACATGCGGCGTGGGGCGCGGGTTCTCGGCGGCAGTCACCACTACGAAGGTGACCGGCTCGTCACCGGCTGGCA
TTCCCACGATCTGCACCAGATCGAGTACGCCATTTCCGGGATGGTCGAGGTCGAGACCGCCGGCACCCACTACCTCCTGC
CGCCGCGGCAGGCAGCGTGGATCCCGGCCGGTCTCGAGCACCGGGTGACGATCAACTCGGCGGTCCGCTCGATCGCCGTG
CTGTTCGACCCCCGGCTGATCGACCGACCGGGGGACCGCGCCCGGATCCTCGCCGCGCCGCCGCTCGTCCGGGAGATGAT
GATCTACGCTCGGCGCTGGCCGATCACCCGCCCGAGCGGTGATCCGGTGTCCGACGGCTTCTTTCGCACGCTCGGCCACC
TCGTCGTCGAGGCGCTCGGTCACGAGGCTCCGCTGAGCCTGCCGACCTCGACCGATCCGGTCGTCGCCGCGGCCATCTCC
TATACCCAGCGCCACCTCGACGCGGTCTCCGTGGCCGAGGTCGGCCGGGCGGTCGGCGTCTCGGAACGGACCCTGCGCCG
CCTGTTCCGCACCGCCCTCGGCCTCTCGTGGCGGCACTACCTGGTGCAGGCCCGGCTGCTGCGGGCGATGGCGCTGCTCG
CCGACCCCACCCGGTCGGTGCTCGAGGTGTCGACCGCCGTCGGCTTCGAGAGCCCGAGCGCCTTCGCCCGGGCCTTCGCC
CAGTATTGCGGCGAGCGCCCGTCGGCCTACCGGCAGCGGATCGGGGTGGTCCCTCCGGCCCTGGCCCCGGTGGGACGGCG
TCCGCACCGCGGTGGGCGCTGA

Upstream 100 bases:

>100_bases
CTCCGTATATTCGTCCGGCGGAGCTTTTGAACCGGTCGGCGTCGGCCTGGCACGGATGGCCGGCGCAGCCGATGTGGCCG
GCACGGCCGGCGCAATCGGC

Downstream 100 bases:

>100_bases
CCACCCGGCGAGCCCGGCGACGTGTGCCCGCGACCAGCTCGGCGGCGGACGTATGGACACTATGTCTACCGAACTAGTTG
ACAAATGGTGCCTCCAATAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MVDMRRGARVLGGSHHYEGDRLVTGWHSHDLHQIEYAISGMVEVETAGTHYLLPPRQAAWIPAGLEHRVTINSAVRSIAV
LFDPRLIDRPGDRARILAAPPLVREMMIYARRWPITRPSGDPVSDGFFRTLGHLVVEALGHEAPLSLPTSTDPVVAAAIS
YTQRHLDAVSVAEVGRAVGVSERTLRRLFRTALGLSWRHYLVQARLLRAMALLADPTRSVLEVSTAVGFESPSAFARAFA
QYCGERPSAYRQRIGVVPPALAPVGRRPHRGGR

Sequences:

>Translated_273_residues
MVDMRRGARVLGGSHHYEGDRLVTGWHSHDLHQIEYAISGMVEVETAGTHYLLPPRQAAWIPAGLEHRVTINSAVRSIAV
LFDPRLIDRPGDRARILAAPPLVREMMIYARRWPITRPSGDPVSDGFFRTLGHLVVEALGHEAPLSLPTSTDPVVAAAIS
YTQRHLDAVSVAEVGRAVGVSERTLRRLFRTALGLSWRHYLVQARLLRAMALLADPTRSVLEVSTAVGFESPSAFARAFA
QYCGERPSAYRQRIGVVPPALAPVGRRPHRGGR
>Mature_273_residues
MVDMRRGARVLGGSHHYEGDRLVTGWHSHDLHQIEYAISGMVEVETAGTHYLLPPRQAAWIPAGLEHRVTINSAVRSIAV
LFDPRLIDRPGDRARILAAPPLVREMMIYARRWPITRPSGDPVSDGFFRTLGHLVVEALGHEAPLSLPTSTDPVVAAAIS
YTQRHLDAVSVAEVGRAVGVSERTLRRLFRTALGLSWRHYLVQARLLRAMALLADPTRSVLEVSTAVGFESPSAFARAFA
QYCGERPSAYRQRIGVVPPALAPVGRRPHRGGR

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=251, Percent_Identity=25.0996015936255, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30075; Mature: 30075

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDMRRGARVLGGSHHYEGDRLVTGWHSHDLHQIEYAISGMVEVETAGTHYLLPPRQAAW
CCCCCCCHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCEEEEEECCCEEECCCCCCCC
IPAGLEHRVTINSAVRSIAVLFDPRLIDRPGDRARILAAPPLVREMMIYARRWPITRPSG
CCCCCCCEEEHHHHHHHHHHHHCCHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCC
DPVSDGFFRTLGHLVVEALGHEAPLSLPTSTDPVVAAAISYTQRHLDAVSVAEVGRAVGV
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SERTLRRLFRTALGLSWRHYLVQARLLRAMALLADPTRSVLEVSTAVGFESPSAFARAFA
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
QYCGERPSAYRQRIGVVPPALAPVGRRPHRGGR
HHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVDMRRGARVLGGSHHYEGDRLVTGWHSHDLHQIEYAISGMVEVETAGTHYLLPPRQAAW
CCCCCCCHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCEEEEEECCCEEECCCCCCCC
IPAGLEHRVTINSAVRSIAVLFDPRLIDRPGDRARILAAPPLVREMMIYARRWPITRPSG
CCCCCCCEEEHHHHHHHHHHHHCCHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCC
DPVSDGFFRTLGHLVVEALGHEAPLSLPTSTDPVVAAAISYTQRHLDAVSVAEVGRAVGV
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SERTLRRLFRTALGLSWRHYLVQARLLRAMALLADPTRSVLEVSTAVGFESPSAFARAFA
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
QYCGERPSAYRQRIGVVPPALAPVGRRPHRGGR
HHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]