| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is fabG [H]
Identifier: 158312560
GI number: 158312560
Start: 822083
End: 822649
Strand: Direct
Name: fabG [H]
Synonym: Franean1_0703
Alternate gene names: 158312560
Gene position: 822083-822649 (Clockwise)
Preceding gene: 158312558
Following gene: 158312561
Centisome position: 9.15
GC content: 68.96
Gene sequence:
>567_bases GTGTCGGACCGCGCCGCGGTCGACAGGGCGTTCGGTCTGGTAAGGGACGAGCTCGGGCCGATCGGGATCCTCGTCACCAG CGCCGCCGTCGCCGAGTTCGTGCCGTTCGAGGCACTTGCCCCCGACGACTGGTCCCGCGCCATCGCGATCAACCTCACGG GGACGTTCAACTGCCTGCAGTCGGCCATCGGCGACATGACCGCGGCGGGCTGGGGCCGCGTCGTCACCATCTCGTCGGCG GCGGGCCAGATCGGCTCCCGGCACCAGGCGCACTACTCGGCGTCGAAAGGCGGAGTGATCGCGCTGACCAGGACTGTGGC CCTCGAATACGCGGCCAGAGGGATCACGGTCAACACGGTCGCGCCGTTCACGATCGACACTCCCATGTTGCGTGCCGCGC AGCACGCCAGGCATGTGCCGGACAGCGAATCGCTGGCACAGGCGATCCCGGCCGGTCGGCTCGGCACCGGCGCCGACATC GCCGCGATGTGTGCCTTCCTGTGCTCGGAGGAGGCCAGCTACACCACTGGCCAGGTCATCGGTGTCAACGGTGGAGCAGT CACGTGA
Upstream 100 bases:
>100_bases GTCGGCAGGTGGGGGTGCTCGACCTAAATGGCGACGCCGCGGAGACGGCGGCCGCGGATCTTCGCGCCAGGGGGTCGTCG CAATCGCGGCCCAGGTCGAC
Downstream 100 bases:
>100_bases GCGCCGGGTACGCCGGCGGCCCTGGAAGCGATGCCGCGAGCAGGGAATCCTGCCACCGCACGGTTACACCAGTCGATTAT ATGATCGTAAAGCAAAAGAG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSDRAAVDRAFGLVRDELGPIGILVTSAAVAEFVPFEALAPDDWSRAIAINLTGTFNCLQSAIGDMTAAGWGRVVTISSA AGQIGSRHQAHYSASKGGVIALTRTVALEYAARGITVNTVAPFTIDTPMLRAAQHARHVPDSESLAQAIPAGRLGTGADI AAMCAFLCSEEASYTTGQVIGVNGGAVT
Sequences:
>Translated_188_residues MSDRAAVDRAFGLVRDELGPIGILVTSAAVAEFVPFEALAPDDWSRAIAINLTGTFNCLQSAIGDMTAAGWGRVVTISSA AGQIGSRHQAHYSASKGGVIALTRTVALEYAARGITVNTVAPFTIDTPMLRAAQHARHVPDSESLAQAIPAGRLGTGADI AAMCAFLCSEEASYTTGQVIGVNGGAVT >Mature_187_residues SDRAAVDRAFGLVRDELGPIGILVTSAAVAEFVPFEALAPDDWSRAIAINLTGTFNCLQSAIGDMTAAGWGRVVTISSAA GQIGSRHQAHYSASKGGVIALTRTVALEYAARGITVNTVAPFTIDTPMLRAAQHARHVPDSESLAQAIPAGRLGTGADIA AMCAFLCSEEASYTTGQVIGVNGGAVT
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=169, Percent_Identity=37.8698224852071, Blast_Score=108, Evalue=2e-24, Organism=Homo sapiens, GI32483357, Length=168, Percent_Identity=35.1190476190476, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI66933014, Length=146, Percent_Identity=31.5068493150685, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI40254992, Length=179, Percent_Identity=31.2849162011173, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI7705925, Length=186, Percent_Identity=30.1075268817204, Blast_Score=80, Evalue=9e-16, Organism=Homo sapiens, GI19923817, Length=170, Percent_Identity=31.1764705882353, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI126723750, Length=146, Percent_Identity=32.1917808219178, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI59889578, Length=149, Percent_Identity=34.8993288590604, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=186, Percent_Identity=33.8709677419355, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4503301, Length=165, Percent_Identity=30.3030303030303, Blast_Score=71, Evalue=5e-13, Organism=Homo sapiens, GI4758504, Length=196, Percent_Identity=30.6122448979592, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4504505, Length=107, Percent_Identity=32.7102803738318, Blast_Score=65, Evalue=3e-11, Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=37.7659574468085, Blast_Score=124, Evalue=3e-30, Organism=Escherichia coli, GI87082100, Length=189, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=3e-24, Organism=Escherichia coli, GI1788459, Length=169, Percent_Identity=36.6863905325444, Blast_Score=97, Evalue=5e-22, Organism=Escherichia coli, GI1789057, Length=183, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1790717, Length=190, Percent_Identity=29.4736842105263, Blast_Score=91, Evalue=4e-20, Organism=Escherichia coli, GI1789208, Length=185, Percent_Identity=32.972972972973, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1786812, Length=169, Percent_Identity=31.3609467455621, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI2367175, Length=190, Percent_Identity=32.6315789473684, Blast_Score=77, Evalue=6e-16, Organism=Escherichia coli, GI1787905, Length=172, Percent_Identity=33.1395348837209, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082160, Length=171, Percent_Identity=27.4853801169591, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789378, Length=148, Percent_Identity=31.7567567567568, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI2367365, Length=185, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25147288, Length=189, Percent_Identity=31.2169312169312, Blast_Score=89, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17555706, Length=188, Percent_Identity=31.3829787234043, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560676, Length=185, Percent_Identity=31.3513513513514, Blast_Score=84, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17561272, Length=195, Percent_Identity=30.2564102564103, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538182, Length=198, Percent_Identity=31.3131313131313, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17536025, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536651, Length=195, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71994600, Length=171, Percent_Identity=29.8245614035088, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=180, Percent_Identity=30.5555555555556, Blast_Score=79, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=107, Percent_Identity=31.7757009345794, Blast_Score=69, Evalue=5e-13, Organism=Drosophila melanogaster, GI24639444, Length=167, Percent_Identity=35.3293413173653, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI21355319, Length=174, Percent_Identity=32.7586206896552, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=30.2083333333333, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356301, Length=135, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24643142, Length=175, Percent_Identity=29.7142857142857, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357041, Length=169, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI18859837, Length=105, Percent_Identity=32.3809523809524, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI17737361, Length=196, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 19302; Mature: 19171
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDRAAVDRAFGLVRDELGPIGILVTSAAVAEFVPFEALAPDDWSRAIAINLTGTFNCLQ CCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHH SAIGDMTAAGWGRVVTISSAAGQIGSRHQAHYSASKGGVIALTRTVALEYAARGITVNTV HHHHCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCCEEEEHHHHHHHHHHCCEEEEEE APFTIDTPMLRAAQHARHVPDSESLAQAIPAGRLGTGADIAAMCAFLCSEEASYTTGQVI CCEEECHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEE GVNGGAVT ECCCCCCC >Mature Secondary Structure SDRAAVDRAFGLVRDELGPIGILVTSAAVAEFVPFEALAPDDWSRAIAINLTGTFNCLQ CCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHH SAIGDMTAAGWGRVVTISSAAGQIGSRHQAHYSASKGGVIALTRTVALEYAARGITVNTV HHHHCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCCEEEEHHHHHHHHHHCCEEEEEE APFTIDTPMLRAAQHARHVPDSESLAQAIPAGRLGTGADIAAMCAFLCSEEASYTTGQVI CCEEECHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEE GVNGGAVT ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]