Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 158312498

GI number: 158312498

Start: 745007

End: 746161

Strand: Direct

Name: ydcM [C]

Synonym: Franean1_0641

Alternate gene names: 158312498

Gene position: 745007-746161 (Clockwise)

Preceding gene: 158312495

Following gene: 158312502

Centisome position: 8.29

GC content: 70.13

Gene sequence:

>1155_bases
GTGTTCAACGACGCGATCCGGGCCCGCGACGAGGCGTACAAGGCCGGCGAGAAACTGTCGGACACCGAGGTTCAGCGCCG
GGTGGTCACCCTCGCGAAACTCACCGACGAGCGAACCTGGCTGTCCGAGGTGTCGTCGGTGGTACTCGTGCAGGCGTGCC
AGGACGCACGCCGGGCGTTCCGGAACTGGTTCGACTCGCTGTCCGGGAAGCGGAAAGGCCGGCAGGTCGGCCATCCGCGG
TTCCGGTCACGGAAGGACAACCGGCAGTCGATCCGCCTCACCCGCAACGGCTTCACCGTCACGCCCCGAGGGGTGCGGGT
GGCGAAGGTCGGAGATCTGCGGCTGGCCTGGTCGCGTCCGCTGCCCTCGGTTCCGACGTCGGCGACGGTGATCCGGGAGG
CGGACGGCAGGTACTACGTGTCGTTCGTCGTCGACGTCGACGACGTCCCCTCCCCGGCGACAGGCGCCGAGATCGGCGTC
GACCTCGGGTTGGACCGGCTCGCGACCCTGTCAACCGGACAGATCGTCGCGAACCCGCGTCCTCTGCGGTCGCGTCAGCG
CAGGCTCGCCCGCGCACAGCGGGCACTGGCCCGCAAGCGGAAGGGTTCGGTGAACCGGCGCAAGGCGGTCCGCCGGGTCG
CGGTCGAACATCGGAAGGTACGGGACACCCGCCGGGATCATCATCACAAGCTCGCTGCTCGGCTGGTCCGCGACAACCAA
GCGGTCTACGTCGAGGATCTGGCGGTAGCCGGGCTGGCTCGTACGCGGCTGGCCCGGTCGGTGCACGACGCGGGCTGGTC
GATGCTGGTCGGTCTGCTCGAGGAGAAAGCGGCCCGGTGTGGCCGGGCCGTGGTGAGGGTGGGCCGGTTCTTCCCGTCGT
CGCAGGTCTGCTCGGCCTGCGGCCACCGGGACGGCCCGAAGCCTCTCCAGGTCCGGACGTGGACCTGTCCGGGGTGCGGT
GTCAGCCACGACCGGGACCTGAATGCCGCGCGGAACATCCTCGTCGAGGGTCAGCGCCTGGTCGCCGCTGGGCGGAAAGG
CGTGGCTGCGATGCCACGTCAGGCGGAGACCGTAAACGCCTGCGGAGCCGACGTGAGACCCGGACCCCTCCGGGCAGCTG
GCTGTGAAACAGGAACCCACCGAGGTGCCGCGTGA

Upstream 100 bases:

>100_bases
TGCTGGATGGTGTGGCAGTCGTTCGTTACCGCTACCGTGCCTACCCCGGGCCGGGGCAGGCACGGGCGTTGGCGCGGGCG
TTCGGCTGCGCCCGGGGGTC

Downstream 100 bases:

>100_bases
ACCCACGCCGCACGGCAGGAACCCCCAGCCTTCAGGCCGGGGAGGACGTCAATATCGTCGATCGGTCGGGTCCGACGCAC
CCGGCGTCTCTCAGAGTGGT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MFNDAIRARDEAYKAGEKLSDTEVQRRVVTLAKLTDERTWLSEVSSVVLVQACQDARRAFRNWFDSLSGKRKGRQVGHPR
FRSRKDNRQSIRLTRNGFTVTPRGVRVAKVGDLRLAWSRPLPSVPTSATVIREADGRYYVSFVVDVDDVPSPATGAEIGV
DLGLDRLATLSTGQIVANPRPLRSRQRRLARAQRALARKRKGSVNRRKAVRRVAVEHRKVRDTRRDHHHKLAARLVRDNQ
AVYVEDLAVAGLARTRLARSVHDAGWSMLVGLLEEKAARCGRAVVRVGRFFPSSQVCSACGHRDGPKPLQVRTWTCPGCG
VSHDRDLNAARNILVEGQRLVAAGRKGVAAMPRQAETVNACGADVRPGPLRAAGCETGTHRGAA

Sequences:

>Translated_384_residues
MFNDAIRARDEAYKAGEKLSDTEVQRRVVTLAKLTDERTWLSEVSSVVLVQACQDARRAFRNWFDSLSGKRKGRQVGHPR
FRSRKDNRQSIRLTRNGFTVTPRGVRVAKVGDLRLAWSRPLPSVPTSATVIREADGRYYVSFVVDVDDVPSPATGAEIGV
DLGLDRLATLSTGQIVANPRPLRSRQRRLARAQRALARKRKGSVNRRKAVRRVAVEHRKVRDTRRDHHHKLAARLVRDNQ
AVYVEDLAVAGLARTRLARSVHDAGWSMLVGLLEEKAARCGRAVVRVGRFFPSSQVCSACGHRDGPKPLQVRTWTCPGCG
VSHDRDLNAARNILVEGQRLVAAGRKGVAAMPRQAETVNACGADVRPGPLRAAGCETGTHRGAA
>Mature_384_residues
MFNDAIRARDEAYKAGEKLSDTEVQRRVVTLAKLTDERTWLSEVSSVVLVQACQDARRAFRNWFDSLSGKRKGRQVGHPR
FRSRKDNRQSIRLTRNGFTVTPRGVRVAKVGDLRLAWSRPLPSVPTSATVIREADGRYYVSFVVDVDDVPSPATGAEIGV
DLGLDRLATLSTGQIVANPRPLRSRQRRLARAQRALARKRKGSVNRRKAVRRVAVEHRKVRDTRRDHHHKLAARLVRDNQ
AVYVEDLAVAGLARTRLARSVHDAGWSMLVGLLEEKAARCGRAVVRVGRFFPSSQVCSACGHRDGPKPLQVRTWTCPGCG
VSHDRDLNAARNILVEGQRLVAAGRKGVAAMPRQAETVNACGADVRPGPLRAAGCETGTHRGAA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=378, Percent_Identity=27.7777777777778, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42411; Mature: 42411

Theoretical pI: Translated: 11.83; Mature: 11.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNDAIRARDEAYKAGEKLSDTEVQRRVVTLAKLTDERTWLSEVSSVVLVQACQDARRAF
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNWFDSLSGKRKGRQVGHPRFRSRKDNRQSIRLTRNGFTVTPRGVRVAKVGDLRLAWSRP
HHHHHHHCCCCCCCCCCCCHHHCCCCCCCEEEEEECCEEECCCCEEEEEECCEEEEECCC
LPSVPTSATVIREADGRYYVSFVVDVDDVPSPATGAEIGVDLGLDRLATLSTGQIVANPR
CCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHCCHHHHHHCCCCCEEECCC
PLRSRQRRLARAQRALARKRKGSVNRRKAVRRVAVEHRKVRDTRRDHHHKLAARLVRDNQ
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AVYVEDLAVAGLARTRLARSVHDAGWSMLVGLLEEKAARCGRAVVRVGRFFPSSQVCSAC
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GHRDGPKPLQVRTWTCPGCGVSHDRDLNAARNILVEGQRLVAAGRKGVAAMPRQAETVNA
CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHH
CGADVRPGPLRAAGCETGTHRGAA
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFNDAIRARDEAYKAGEKLSDTEVQRRVVTLAKLTDERTWLSEVSSVVLVQACQDARRAF
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNWFDSLSGKRKGRQVGHPRFRSRKDNRQSIRLTRNGFTVTPRGVRVAKVGDLRLAWSRP
HHHHHHHCCCCCCCCCCCCHHHCCCCCCCEEEEEECCEEECCCCEEEEEECCEEEEECCC
LPSVPTSATVIREADGRYYVSFVVDVDDVPSPATGAEIGVDLGLDRLATLSTGQIVANPR
CCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHCCHHHHHHCCCCCEEECCC
PLRSRQRRLARAQRALARKRKGSVNRRKAVRRVAVEHRKVRDTRRDHHHKLAARLVRDNQ
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AVYVEDLAVAGLARTRLARSVHDAGWSMLVGLLEEKAARCGRAVVRVGRFFPSSQVCSAC
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GHRDGPKPLQVRTWTCPGCGVSHDRDLNAARNILVEGQRLVAAGRKGVAAMPRQAETVNA
CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHH
CGADVRPGPLRAAGCETGTHRGAA
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]