| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312476
Identifier: 158312476
GI number: 158312476
Start: 720249
End: 721457
Strand: Direct
Name: 158312476
Synonym: Franean1_0619
Alternate gene names: NA
Gene position: 720249-721457 (Clockwise)
Preceding gene: 158312475
Following gene: 158312477
Centisome position: 8.02
GC content: 67.16
Gene sequence:
>1209_bases ATGACGTCATCACAGTCGCTGGACTGGCTGATCTCGGTCGACGACCACGTCCTGGAGCCGCCGAACCTGTGGACCGACCG GCTCCCGGCCAAGGACCACGACCGGGCTCCCCACATGGTGATCGACGACACGGGAATGGACTGCTGGGTCTACGACGGCA AGCGTTTCCCGAGCTCCGGGCTGAGCGCCGTCGCCGGGAAGGAGAAGGAGGAGTTCAGCCCCGAGCCCCTCTCCTATGCC GACATGCGGCCCGGTTGCTACGACCCGCAGGCCCGCCTGGAGGACATGAACCGGGCCGGCATCCTGGCCTCGCTGTGCTT CCCGACGGTGACCCGGTTCTGCGGGCAGATGTTCTCCGAGGCGAGCGACCGCGAGTTCGGCCTGGTGTGCCTGAAGATCT ACAACGACTGGATGATCGAGGAGTGGTGCGGCAGCGCTCCCGGCCGCTACATCCCGCTCACCCTCATCCCGCTGTGGGAC CCGCAGCTCGCGGTGAAGGAGCTCGAGCGCTGCGCGGCGAAGGGGTCCACCACCTTCGCCTTCTCGGAGAACCCGGCCCC GCTGGGCCTGCCGACCATCCACGACCGCGACGGGTACTGGGAGCCGGTGATGGCTGCCGCGAACGACCTGGAGATGGTCG CGTCGATGCACGTCGGCTCCTCGTCGCAGGTGCCGAAGATCGCTCCCGACGCGCCGTTCATGGCGAACCTGACCTGGGGC GCGATGCGTACCTCGGGCGCCATGCTCTCCTGGCTGTTCAGCGGGATGTTCCAGCGGTACCCGAAGCTGAAGATCGCGCT CTCGGAGGGCGAGATCGGCTGGATGCCGTACTACCTGGAGCGCGCCGAGCAGGTGATCGACAAGCAGCGCCACTGGGTCA AGCGTGGTGTCCGCTTCAACGAGCACGCCGGGGCGGACGCCCTCGACCTGGACACCCTCGACATCCGCGCCAGCTTCCGT GAGCACGTCTTCGGTTGCTTCATCGACGACGCGCACGGCATCGCCAGCATCGACGAGATCGGCGAGGACAACATCATGTG CGAGACGGACTACCCGCACTCCGACTCGACCTGGCCGAACTGCATCGACGTCGTCAGGAACCGGATCGGCCACCTGTCGG AGGAGGTCCAGTACAAGATCCTGCGCGGCAACGCCGAGCGGCTGTACCGGTTCACCCCGGCCGAGCCGCCTGTGCTCGCG AAGGCCTGA
Upstream 100 bases:
>100_bases GCGAGCGCGGGCCGGACGGCATCCGCGCCTTCCAGGAAGTCAAGCACCTCGCCATCGGCGAGCTCCGCTGAGCCCGTCCC CGGACCGGAGGGAAACACTG
Downstream 100 bases:
>100_bases CATGGCAGGGCGGGCACCGCTCGCGGTCGTCGACCGCGAGCGGTGCATCGGCAGCGGCATGTGTGTGGACTACGCGCCGG GCACCTTCACCCAGGACGAG
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidase; Amidohydrolase Family Protein; Amidohydrolase Family; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Minocarboxymuconate-Semialdehyde Decarboxylase.
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTSSQSLDWLISVDDHVLEPPNLWTDRLPAKDHDRAPHMVIDDTGMDCWVYDGKRFPSSGLSAVAGKEKEEFSPEPLSYA DMRPGCYDPQARLEDMNRAGILASLCFPTVTRFCGQMFSEASDREFGLVCLKIYNDWMIEEWCGSAPGRYIPLTLIPLWD PQLAVKELERCAAKGSTTFAFSENPAPLGLPTIHDRDGYWEPVMAAANDLEMVASMHVGSSSQVPKIAPDAPFMANLTWG AMRTSGAMLSWLFSGMFQRYPKLKIALSEGEIGWMPYYLERAEQVIDKQRHWVKRGVRFNEHAGADALDLDTLDIRASFR EHVFGCFIDDAHGIASIDEIGEDNIMCETDYPHSDSTWPNCIDVVRNRIGHLSEEVQYKILRGNAERLYRFTPAEPPVLA KA
Sequences:
>Translated_402_residues MTSSQSLDWLISVDDHVLEPPNLWTDRLPAKDHDRAPHMVIDDTGMDCWVYDGKRFPSSGLSAVAGKEKEEFSPEPLSYA DMRPGCYDPQARLEDMNRAGILASLCFPTVTRFCGQMFSEASDREFGLVCLKIYNDWMIEEWCGSAPGRYIPLTLIPLWD PQLAVKELERCAAKGSTTFAFSENPAPLGLPTIHDRDGYWEPVMAAANDLEMVASMHVGSSSQVPKIAPDAPFMANLTWG AMRTSGAMLSWLFSGMFQRYPKLKIALSEGEIGWMPYYLERAEQVIDKQRHWVKRGVRFNEHAGADALDLDTLDIRASFR EHVFGCFIDDAHGIASIDEIGEDNIMCETDYPHSDSTWPNCIDVVRNRIGHLSEEVQYKILRGNAERLYRFTPAEPPVLA KA >Mature_401_residues TSSQSLDWLISVDDHVLEPPNLWTDRLPAKDHDRAPHMVIDDTGMDCWVYDGKRFPSSGLSAVAGKEKEEFSPEPLSYAD MRPGCYDPQARLEDMNRAGILASLCFPTVTRFCGQMFSEASDREFGLVCLKIYNDWMIEEWCGSAPGRYIPLTLIPLWDP QLAVKELERCAAKGSTTFAFSENPAPLGLPTIHDRDGYWEPVMAAANDLEMVASMHVGSSSQVPKIAPDAPFMANLTWGA MRTSGAMLSWLFSGMFQRYPKLKIALSEGEIGWMPYYLERAEQVIDKQRHWVKRGVRFNEHAGADALDLDTLDIRASFRE HVFGCFIDDAHGIASIDEIGEDNIMCETDYPHSDSTWPNCIDVVRNRIGHLSEEVQYKILRGNAERLYRFTPAEPPVLAK A
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI71995651, Length=189, Percent_Identity=28.042328042328, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45264; Mature: 45132
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSQSLDWLISVDDHVLEPPNLWTDRLPAKDHDRAPHMVIDDTGMDCWVYDGKRFPSSG CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC LSAVAGKEKEEFSPEPLSYADMRPGCYDPQARLEDMNRAGILASLCFPTVTRFCGQMFSE CHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC ASDREFGLVCLKIYNDWMIEEWCGSAPGRYIPLTLIPLWDPQLAVKELERCAAKGSTTFA CCCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEE FSENPAPLGLPTIHDRDGYWEPVMAAANDLEMVASMHVGSSSQVPKIAPDAPFMANLTWG ECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHH AMRTSGAMLSWLFSGMFQRYPKLKIALSEGEIGWMPYYLERAEQVIDKQRHWVKRGVRFN HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EHAGADALDLDTLDIRASFREHVFGCFIDDAHGIASIDEIGEDNIMCETDYPHSDSTWPN CCCCCCEECCCHHHHHHHHHHHHEEEEEECCCCCCCHHHCCCCCEEECCCCCCCCCCCHH CIDVVRNRIGHLSEEVQYKILRGNAERLYRFTPAEPPVLAKA HHHHHHHHHHCHHHHHEEEEEECCHHHEEEECCCCCCCCCCC >Mature Secondary Structure TSSQSLDWLISVDDHVLEPPNLWTDRLPAKDHDRAPHMVIDDTGMDCWVYDGKRFPSSG CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC LSAVAGKEKEEFSPEPLSYADMRPGCYDPQARLEDMNRAGILASLCFPTVTRFCGQMFSE CHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC ASDREFGLVCLKIYNDWMIEEWCGSAPGRYIPLTLIPLWDPQLAVKELERCAAKGSTTFA CCCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEE FSENPAPLGLPTIHDRDGYWEPVMAAANDLEMVASMHVGSSSQVPKIAPDAPFMANLTWG ECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHH AMRTSGAMLSWLFSGMFQRYPKLKIALSEGEIGWMPYYLERAEQVIDKQRHWVKRGVRFN HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EHAGADALDLDTLDIRASFREHVFGCFIDDAHGIASIDEIGEDNIMCETDYPHSDSTWPN CCCCCCEECCCHHHHHHHHHHHHEEEEEECCCCCCCHHHCCCCCEEECCCCCCCCCCCHH CIDVVRNRIGHLSEEVQYKILRGNAERLYRFTPAEPPVLAKA HHHHHHHHHHCHHHHHEEEEEECCHHHEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA