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The map label for this gene is xylB [H]

Identifier: 158312294

GI number: 158312294

Start: 508969

End: 510324

Strand: Direct

Name: xylB [H]

Synonym: Franean1_0431

Alternate gene names: 158312294

Gene position: 508969-510324 (Clockwise)

Preceding gene: 158312293

Following gene: 158312295

Centisome position: 5.67

GC content: 72.35

Gene sequence:

>1356_bases
ATGCCTGAGCCGATCATTGCGGGCTTCTATCCCGACCCGACGGTCTGCCGAGTCGGTGACGACTATTACCTGGCCCATTC
CAGCTTCGAGTACTTTCCCGGCGCGCCGATCTGGCACAGCCGCGACCTGATCCGCTGGACGCAGATCGGCCACATCCTGA
CCCGCCGCAGCCAGTTCGCCCGCGGCGACTGCCGCCCGTCCTCCGGGCTGTACGCCGGGACGCTGCGGCATCACGACGGG
CGTTTCGTCTACGTCACCACGAACGTCAGCGACTTCGACGGCGGCCAGCTGATCGTCACCGCCGACGACCCGGCCGGCCC
GTGGAGCGAGCCGGTTCGGGTGCCCGAGGCGATCGGCATCGACCCGGACCTCGCCTGGGACGACGACGGCACGTGCTACC
TGAGCTGGAAGGCGATGAGCCTCGCCGACGGCGAGATCGGCATCCGCCAGGCCCCGCTCGACATCTCGTCGGGCAAGTTC
CTCGCCCCGGCGTACCCGATCTGGCAGGGCAGCGGACTCGCCGCGGCCGAAGGGCCGCATCTGTACGCCATCGACGGCCT
CTGGTACCTGCTGCTCGCCGAGGGCGGCACCGAGCGCGGGCACGCCGTCACCGTCGCGCGCGGCCCGCACCCGTCCGGGC
CCTTCGAGGGCTGTGCGGCCAACCCGATCCTGAGCCACCGCAGCACCATCCACCCGGTGCAGAACACCGGCCACGCCGAC
CTGGTCCGCGCGCCGGGCGGCGGCTGGGCCGCCGTCTATCTGGGTACCCGGCCGCGCGGCTGGACGCCGGGCTTCCACGT
CCTGGGCCGGGAGACGTTCCTGGCCGGCATCGACTGGGTGGACGGCTGGCCGGTTTTCGACGAGGACCGCTACCAGGTCC
CACCGCTCGACACCGGCTTTACGGAGGTGTTCGGTGACTCACCGCCGCATCTGCGCTGGGTCGCCGACGGCAGCGGCCTG
CGGTGCACCCGGGTGCGCGATCTGCGCTGGTCCGCCGAAGCGACGCTCGACGGCCCGGGCCGCTTCGAGGTGCGCATCGA
CGACCGGCACGCGTACGGCCTGACCCGCCACCACGACCGGGTCGAGGCGACGGCCCGCGTCGGTGACCTCGGCGCCGTCC
TCGCCACGCTCCCCGTCGCGGATGGTCACACGGTCCTGCGGATCGAGGCGGTGCCACCGCCGTCACGCGACGCCGGGCCC
GACGAGATTGTCCTCTCCGCCGGCTCGCACGAACTCGCCCGCCTCGACGGGCGCTACCTCTCCACCGAAGTCGCGTCCGG
GTTCACCGGCCGCATGCTCGCCACCGCCGGACCGCACGTCCGGTCGGTGACCTACCGCCCCCAGGAGCAGCCATGA

Upstream 100 bases:

>100_bases
GGTGCACGTGCCGGGCGCGGAGCAGCCCGTGACGGTCGGCCACGGCGACCACCGCTGGCTCGTGGCTGACCCGGTGTCGC
GCTCCGAGGGGCGGTGACCG

Downstream 100 bases:

>100_bases
AAGCTGTCCTGAGCTCTCTCCTTCTCACCGCCGGCCTCATCCTCGTCCCGGCCGGTGCCGCGTCGGCCGCACCGCCCGAC
TGCGCCGCCGCCACGCCCGG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MPEPIIAGFYPDPTVCRVGDDYYLAHSSFEYFPGAPIWHSRDLIRWTQIGHILTRRSQFARGDCRPSSGLYAGTLRHHDG
RFVYVTTNVSDFDGGQLIVTADDPAGPWSEPVRVPEAIGIDPDLAWDDDGTCYLSWKAMSLADGEIGIRQAPLDISSGKF
LAPAYPIWQGSGLAAAEGPHLYAIDGLWYLLLAEGGTERGHAVTVARGPHPSGPFEGCAANPILSHRSTIHPVQNTGHAD
LVRAPGGGWAAVYLGTRPRGWTPGFHVLGRETFLAGIDWVDGWPVFDEDRYQVPPLDTGFTEVFGDSPPHLRWVADGSGL
RCTRVRDLRWSAEATLDGPGRFEVRIDDRHAYGLTRHHDRVEATARVGDLGAVLATLPVADGHTVLRIEAVPPPSRDAGP
DEIVLSAGSHELARLDGRYLSTEVASGFTGRMLATAGPHVRSVTYRPQEQP

Sequences:

>Translated_451_residues
MPEPIIAGFYPDPTVCRVGDDYYLAHSSFEYFPGAPIWHSRDLIRWTQIGHILTRRSQFARGDCRPSSGLYAGTLRHHDG
RFVYVTTNVSDFDGGQLIVTADDPAGPWSEPVRVPEAIGIDPDLAWDDDGTCYLSWKAMSLADGEIGIRQAPLDISSGKF
LAPAYPIWQGSGLAAAEGPHLYAIDGLWYLLLAEGGTERGHAVTVARGPHPSGPFEGCAANPILSHRSTIHPVQNTGHAD
LVRAPGGGWAAVYLGTRPRGWTPGFHVLGRETFLAGIDWVDGWPVFDEDRYQVPPLDTGFTEVFGDSPPHLRWVADGSGL
RCTRVRDLRWSAEATLDGPGRFEVRIDDRHAYGLTRHHDRVEATARVGDLGAVLATLPVADGHTVLRIEAVPPPSRDAGP
DEIVLSAGSHELARLDGRYLSTEVASGFTGRMLATAGPHVRSVTYRPQEQP
>Mature_450_residues
PEPIIAGFYPDPTVCRVGDDYYLAHSSFEYFPGAPIWHSRDLIRWTQIGHILTRRSQFARGDCRPSSGLYAGTLRHHDGR
FVYVTTNVSDFDGGQLIVTADDPAGPWSEPVRVPEAIGIDPDLAWDDDGTCYLSWKAMSLADGEIGIRQAPLDISSGKFL
APAYPIWQGSGLAAAEGPHLYAIDGLWYLLLAEGGTERGHAVTVARGPHPSGPFEGCAANPILSHRSTIHPVQNTGHADL
VRAPGGGWAAVYLGTRPRGWTPGFHVLGRETFLAGIDWVDGWPVFDEDRYQVPPLDTGFTEVFGDSPPHLRWVADGSGLR
CTRVRDLRWSAEATLDGPGRFEVRIDDRHAYGLTRHHDRVEATARVGDLGAVLATLPVADGHTVLRIEAVPPPSRDAGPD
EIVLSAGSHELARLDGRYLSTEVASGFTGRMLATAGPHVRSVTYRPQEQP

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=312, Percent_Identity=36.5384615384615, Blast_Score=175, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 49080; Mature: 48949

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEPIIAGFYPDPTVCRVGDDYYLAHSSFEYFPGAPIWHSRDLIRWTQIGHILTRRSQFA
CCCCEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RGDCRPSSGLYAGTLRHHDGRFVYVTTNVSDFDGGQLIVTADDPAGPWSEPVRVPEAIGI
CCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCC
DPDLAWDDDGTCYLSWKAMSLADGEIGIRQAPLDISSGKFLAPAYPIWQGSGLAAAEGPH
CCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCEECCCCCEECCCCCCCCCCCE
LYAIDGLWYLLLAEGGTERGHAVTVARGPHPSGPFEGCAANPILSHRSTIHPVQNTGHAD
EEEECCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCE
LVRAPGGGWAAVYLGTRPRGWTPGFHVLGRETFLAGIDWVDGWPVFDEDRYQVPPLDTGF
EEECCCCCEEEEEECCCCCCCCCCCEEECCEEEEEECCCCCCCCCCCCCCEECCCCCCCH
TEVFGDSPPHLRWVADGSGLRCTRVRDLRWSAEATLDGPGRFEVRIDDRHAYGLTRHHDR
HHHHCCCCCCEEEEECCCCEEEEEEECCEEECCEEECCCCEEEEEECCCEECCCCCCCCH
VEATARVGDLGAVLATLPVADGHTVLRIEAVPPPSRDAGPDEIVLSAGSHELARLDGRYL
HHHHHHHCHHHEEEHEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCEE
STEVASGFTGRMLATAGPHVRSVTYRPQEQP
EHHHHCCCCCCEEECCCCCEEEEECCCCCCC
>Mature Secondary Structure 
PEPIIAGFYPDPTVCRVGDDYYLAHSSFEYFPGAPIWHSRDLIRWTQIGHILTRRSQFA
CCCEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RGDCRPSSGLYAGTLRHHDGRFVYVTTNVSDFDGGQLIVTADDPAGPWSEPVRVPEAIGI
CCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCC
DPDLAWDDDGTCYLSWKAMSLADGEIGIRQAPLDISSGKFLAPAYPIWQGSGLAAAEGPH
CCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCEECCCCCEECCCCCCCCCCCE
LYAIDGLWYLLLAEGGTERGHAVTVARGPHPSGPFEGCAANPILSHRSTIHPVQNTGHAD
EEEECCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCE
LVRAPGGGWAAVYLGTRPRGWTPGFHVLGRETFLAGIDWVDGWPVFDEDRYQVPPLDTGF
EEECCCCCEEEEEECCCCCCCCCCCEEECCEEEEEECCCCCCCCCCCCCCEECCCCCCCH
TEVFGDSPPHLRWVADGSGLRCTRVRDLRWSAEATLDGPGRFEVRIDDRHAYGLTRHHDR
HHHHCCCCCCEEEEECCCCEEEEEEECCEEECCEEECCCCEEEEEECCCEECCCCCCCCH
VEATARVGDLGAVLATLPVADGHTVLRIEAVPPPSRDAGPDEIVLSAGSHELARLDGRYL
HHHHHHHCHHHEEEHEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCEE
STEVASGFTGRMLATAGPHVRSVTYRPQEQP
EHHHHCCCCCCEEECCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]