| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158312293
Identifier: 158312293
GI number: 158312293
Start: 506431
End: 508965
Strand: Direct
Name: 158312293
Synonym: Franean1_0430
Alternate gene names: NA
Gene position: 506431-508965 (Clockwise)
Preceding gene: 158312292
Following gene: 158312294
Centisome position: 5.64
GC content: 72.98
Gene sequence:
>2535_bases ATGGTTCAGCCCTGCGCACCTCGTTTCGAACACCGCACCGAGCCCGGCCCGGTGCTCGGCCTCGGCGCACCAGCCCCCCG GCTCTCCTGGACCGTCACGCGCGCGGAGGAGGGCTGGCGCCAGACGGCCTACGAGGTCCAGGTCGCCGGCAAGGTCTTCA CCGTGCGCAGCGCCGAGCAGGTGCTGGTCCCATGGCCGGCCCGGCCGTTGCGCTCACGCGAGCGGGCCGAGGTCAAGGTC CGGGTGGCGTACGGCGATCACTGGAGCCCGTGGAGCGAAGCGGCCACCGTCGAGGCGGGCCTGCTGGACGCGGCCGACTG GACAGCGCGCTTCATCAGCCCGGTCGACCCGGGCGAACGGGCGCCCGTCGTCGTCGGCCACGTCGAGGTGCCCGGGCCGG TCCGCAGCGCTCGGCTGTACGCCACCGCCCACGGCATCTACGTACCGTCGATCAACGGCCGCCGCGTCGACGACACCGTC CTCGCGCCGGGTTGGACATCGTACGAGCACCGGCTGCGCTACCACGTCTACGACGTCACGACCCTGATCCGGCCGGGCGA GAACGTCCTGGAGTTCGTGCTCGGCAACGGCTGGTACCGCGGACGGCTCGGCTGGACCAACCAGCGCGCGATCTACGGCG ACCGCCTCGCCCTGCTCGCCCAGCTGGAGATCACCACCTTCGACGGCGCCGTCCGCGTACTGGCGACCGACGGCACCTGG CATGCCCGGCCGAGCGAGGTGCTGGCCGACGACCTGTACGACGGCCAGACGACCGACCTGCGCCCGCACGACGCACCGGC GACCGGCGTCGACATCGTCGAGGGCGATCTGACGCGGCTCGTCGCCCCGGACGGCCCTCCGATCCGGCCGACCAGCGTGC TGCCCGCCCGCAAGGTGTGGACCTCCCCGGCCGGCAAGACGCTCGTCGACTTCGGCCAGAACGCCGTCGGATGGATCCGC CTGCGCGTCCGGGACCTGCCCGCGGGAACGACGGTCGTGGTCCGCCACGCCGAGGTGCTGGAAGACAAGGAACTGGGCAC CCGGCCGCTGCGATCGGCCCGCGCCACCGACACCTGGGTGCTGTCGGGCCACGACGAGGTGCTCGAGCCCTCGCTGACGT TGCACGGCTTCCGCTACGCCGAGGTCACCGGAGTGCCGGACCTGCGCGAGCAGGACATCGCGCTGGTCGTCGTCGGCTCG GACCTGCGCCGCACCGGCTGGTTCTCCTCCTCGCACGAACAACTGAACCAGCTGCACGAGAACGTCGTCTGGAGCACCCG CGGCAACTTCGTCGACCTGCCCACCGACTGCCCGCAGCGCGACGAGCGCCTCGGCTGGACCGGCGACATCCAGATCTTCG GGCCGACCGCGACCTTCCTGTACGACACCGCCGGCCTGCTGCGCTCCTGGCTGGCCGACCTGGCCGCCGAGCAGCGCCCC GACGGCTCGGTGCCGCACGTCGTCCCCGAAATCGATCGCGCCCCGGAGTTCCGCACGCCCGCGGCGGCCTGGGGCGACGC CGCCACCGTCGTGCCCTGGACGCTCTACCAGCGCACCGGCGACCTGCAGATGCTCGAACGGCAACTGCCGAGCATGAGCG CCTGGGTCGACAAGGTCGCCGCCCTGGCCGGCCCGGACCGGCTCTGGCGCGGCGGCTTCCAGTTCGGTGACTGGCTCGAC CCGACAGCTCCGCCGGAAAACCCCGGCCGGGCCAAGGCCGACCCCGACGTGGTGGCCACCGCCCACTTCGCCCGCTCGTC GTGGATCGTGGCCGAATCGGCCCGCCTGCTCGGCCGGGCCGCCGACGCGGAGAAATACCGCACGCTGACCGACGAGGTAC GGGCCGCCTTCGTCCGGGCCTTCGTGACGCCGCAGGGCCGGATCCACTCCGACGCGCAGACCCTGTACGCGCTGGCCATC GAGTGGGATCTGCTGCCGGAGGCGGAGCAGCGCGTGGCGGCCGGGCACCGGCTGGCCGAGCTCGTGCGCGACGGCGGGTT CCACATCGCCACCGGCTTCGTCGGCACGCCACTGGTCTGCGACGCCCTCACCAGCACGGGCCACCTCGACGTCGCGTACC GCCTGTTGTTGCAAACGCAGTGCCCGTCCTGGCTCTACCCGGTCACCATGGGCGCCACCACGGTGTGGGAACGCTGGGAC AGCATGCGCCCGGACGGCACCATCAACCCGGGGGAGATGACCTCCTTCAACCACTACGCCCTGGGCGCCGTGGCCGACTG GCTGCACCGCACGGTGGCCGGGCTCGCACCCGCCGCTCCCGGATATCGGCGCCTGCTCGTGCACCCCCGGCTGACGCCGG AGCTCACCGGCGCTGCGGCCACCCATCTGACCCCGTACGGGAAAGCCTCGGTGTCCTGGCTTCGCTCGGCCGGCCACCTG CGGCTCGACGTGCACGTGCCGGTCGGCGCGTCGGCCGAGGTGCACGTGCCGGGCGCGGAGCAGCCCGTGACGGTCGGCCA CGGCGACCACCGCTGGCTCGTGGCTGACCCGGTGTCGCGCTCCGAGGGGCGGTGA
Upstream 100 bases:
>100_bases GCAGATGGCCGCGCCGGTCGCCGACCCGCGCAAGCAGCGCGAGCGGCGCCGGCTGCGCCTGGCCCTCTGACCTTCCACCC CTCGTCACGGGAGTCTCTGC
Downstream 100 bases:
>100_bases CCGATGCCTGAGCCGATCATTGCGGGCTTCTATCCCGACCCGACGGTCTGCCGAGTCGGTGACGACTATTACCTGGCCCA TTCCAGCTTCGAGTACTTTC
Product: alpha-L-rhamnosidase
Products: NA
Alternate protein names: Alpha-Rhamnosidase; Alfa-L-Rhamnosidase; Rhamnosidase; Glycoside Hydrolase Family; Hydrolase; Exported Rhamnosidase A; Secreted Hydrolase; Exported Rhamnosidase Protein; Rhamnosidase A; Alpha-L-Rhamnosidase Protein; Secreted Protein; Glycolsyl Hydrolase Family; Exported Rhamnosidase; Alpha-L-Rhamnosidase Family; Bacterial Alpha-L-Rhamnosidase Family; Alpha-L-Rhamnosidase N-Terminal Domain-Containing Protein; Glycosyl Hydrolase; Alpha-L-Rhamnosidase Domain Protein
Number of amino acids: Translated: 844; Mature: 844
Protein sequence:
>844_residues MVQPCAPRFEHRTEPGPVLGLGAPAPRLSWTVTRAEEGWRQTAYEVQVAGKVFTVRSAEQVLVPWPARPLRSRERAEVKV RVAYGDHWSPWSEAATVEAGLLDAADWTARFISPVDPGERAPVVVGHVEVPGPVRSARLYATAHGIYVPSINGRRVDDTV LAPGWTSYEHRLRYHVYDVTTLIRPGENVLEFVLGNGWYRGRLGWTNQRAIYGDRLALLAQLEITTFDGAVRVLATDGTW HARPSEVLADDLYDGQTTDLRPHDAPATGVDIVEGDLTRLVAPDGPPIRPTSVLPARKVWTSPAGKTLVDFGQNAVGWIR LRVRDLPAGTTVVVRHAEVLEDKELGTRPLRSARATDTWVLSGHDEVLEPSLTLHGFRYAEVTGVPDLREQDIALVVVGS DLRRTGWFSSSHEQLNQLHENVVWSTRGNFVDLPTDCPQRDERLGWTGDIQIFGPTATFLYDTAGLLRSWLADLAAEQRP DGSVPHVVPEIDRAPEFRTPAAAWGDAATVVPWTLYQRTGDLQMLERQLPSMSAWVDKVAALAGPDRLWRGGFQFGDWLD PTAPPENPGRAKADPDVVATAHFARSSWIVAESARLLGRAADAEKYRTLTDEVRAAFVRAFVTPQGRIHSDAQTLYALAI EWDLLPEAEQRVAAGHRLAELVRDGGFHIATGFVGTPLVCDALTSTGHLDVAYRLLLQTQCPSWLYPVTMGATTVWERWD SMRPDGTINPGEMTSFNHYALGAVADWLHRTVAGLAPAAPGYRRLLVHPRLTPELTGAAATHLTPYGKASVSWLRSAGHL RLDVHVPVGASAEVHVPGAEQPVTVGHGDHRWLVADPVSRSEGR
Sequences:
>Translated_844_residues MVQPCAPRFEHRTEPGPVLGLGAPAPRLSWTVTRAEEGWRQTAYEVQVAGKVFTVRSAEQVLVPWPARPLRSRERAEVKV RVAYGDHWSPWSEAATVEAGLLDAADWTARFISPVDPGERAPVVVGHVEVPGPVRSARLYATAHGIYVPSINGRRVDDTV LAPGWTSYEHRLRYHVYDVTTLIRPGENVLEFVLGNGWYRGRLGWTNQRAIYGDRLALLAQLEITTFDGAVRVLATDGTW HARPSEVLADDLYDGQTTDLRPHDAPATGVDIVEGDLTRLVAPDGPPIRPTSVLPARKVWTSPAGKTLVDFGQNAVGWIR LRVRDLPAGTTVVVRHAEVLEDKELGTRPLRSARATDTWVLSGHDEVLEPSLTLHGFRYAEVTGVPDLREQDIALVVVGS DLRRTGWFSSSHEQLNQLHENVVWSTRGNFVDLPTDCPQRDERLGWTGDIQIFGPTATFLYDTAGLLRSWLADLAAEQRP DGSVPHVVPEIDRAPEFRTPAAAWGDAATVVPWTLYQRTGDLQMLERQLPSMSAWVDKVAALAGPDRLWRGGFQFGDWLD PTAPPENPGRAKADPDVVATAHFARSSWIVAESARLLGRAADAEKYRTLTDEVRAAFVRAFVTPQGRIHSDAQTLYALAI EWDLLPEAEQRVAAGHRLAELVRDGGFHIATGFVGTPLVCDALTSTGHLDVAYRLLLQTQCPSWLYPVTMGATTVWERWD SMRPDGTINPGEMTSFNHYALGAVADWLHRTVAGLAPAAPGYRRLLVHPRLTPELTGAAATHLTPYGKASVSWLRSAGHL RLDVHVPVGASAEVHVPGAEQPVTVGHGDHRWLVADPVSRSEGR >Mature_844_residues MVQPCAPRFEHRTEPGPVLGLGAPAPRLSWTVTRAEEGWRQTAYEVQVAGKVFTVRSAEQVLVPWPARPLRSRERAEVKV RVAYGDHWSPWSEAATVEAGLLDAADWTARFISPVDPGERAPVVVGHVEVPGPVRSARLYATAHGIYVPSINGRRVDDTV LAPGWTSYEHRLRYHVYDVTTLIRPGENVLEFVLGNGWYRGRLGWTNQRAIYGDRLALLAQLEITTFDGAVRVLATDGTW HARPSEVLADDLYDGQTTDLRPHDAPATGVDIVEGDLTRLVAPDGPPIRPTSVLPARKVWTSPAGKTLVDFGQNAVGWIR LRVRDLPAGTTVVVRHAEVLEDKELGTRPLRSARATDTWVLSGHDEVLEPSLTLHGFRYAEVTGVPDLREQDIALVVVGS DLRRTGWFSSSHEQLNQLHENVVWSTRGNFVDLPTDCPQRDERLGWTGDIQIFGPTATFLYDTAGLLRSWLADLAAEQRP DGSVPHVVPEIDRAPEFRTPAAAWGDAATVVPWTLYQRTGDLQMLERQLPSMSAWVDKVAALAGPDRLWRGGFQFGDWLD PTAPPENPGRAKADPDVVATAHFARSSWIVAESARLLGRAADAEKYRTLTDEVRAAFVRAFVTPQGRIHSDAQTLYALAI EWDLLPEAEQRVAAGHRLAELVRDGGFHIATGFVGTPLVCDALTSTGHLDVAYRLLLQTQCPSWLYPVTMGATTVWERWD SMRPDGTINPGEMTSFNHYALGAVADWLHRTVAGLAPAAPGYRRLLVHPRLTPELTGAAATHLTPYGKASVSWLRSAGHL RLDVHVPVGASAEVHVPGAEQPVTVGHGDHRWLVADPVSRSEGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92776; Mature: 92776
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQPCAPRFEHRTEPGPVLGLGAPAPRLSWTVTRAEEGWRQTAYEVQVAGKVFTVRSAEQ CCCCCCCHHHCCCCCCCEEECCCCCCCCEEEEECCHHHHHHCEEEEEECCEEEEEECCCE VLVPWPARPLRSRERAEVKVRVAYGDHWSPWSEAATVEAGLLDAADWTARFISPVDPGER EEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHCCEEHHCCCCCCHHHHHHCCCCCCCCC APVVVGHVEVPGPVRSARLYATAHGIYVPSINGRRVDDTVLAPGWTSYEHRLRYHVYDVT CCEEEEEEECCCCCCCEEEEEEECEEEEECCCCCCCCCEEECCCCCCHHHEEEEEEEEEE TLIRPGENVLEFVLGNGWYRGRLGWTNQRAIYGDRLALLAQLEITTFDGAVRVLATDGTW EEECCCHHHHHHHHCCCEEECCCCCCCCCEEECCCEEEEEEEEEEEECCEEEEEEECCCC HARPSEVLADDLYDGQTTDLRPHDAPATGVDIVEGDLTRLVAPDGPPIRPTSVLPARKVW CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCHHHH TSPAGKTLVDFGQNAVGWIRLRVRDLPAGTTVVVRHAEVLEDKELGTRPLRSARATDTWV CCCCCCHHHHCCCCCEEEEEEEEEECCCCCEEEEEEHHHHHHHHCCCCCHHHCCCCCEEE LSGHDEVLEPSLTLHGFRYAEVTGVPDLREQDIALVVVGSDLRRTGWFSSSHEQLNQLHE ECCCHHHHCCCEEECCEEEEEECCCCCCCCCCEEEEEECCCCHHCCCCCCCHHHHHHHHH NVVWSTRGNFVDLPTDCPQRDERLGWTGDIQIFGPTATFLYDTAGLLRSWLADLAAEQRP HEEEECCCCEEECCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC DGSVPHVVPEIDRAPEFRTPAAAWGDAATVVPWTLYQRTGDLQMLERQLPSMSAWVDKVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCHHHHHHHCCHHHHHHHHHH ALAGPDRLWRGGFQFGDWLDPTAPPENPGRAKADPDVVATAHFARSSWIVAESARLLGRA HHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCEEEEHHHHHHHHH ADAEKYRTLTDEVRAAFVRAFVTPQGRIHSDAQTLYALAIEWDLLPEAEQRVAAGHRLAE CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHH LVRDGGFHIATGFVGTPLVCDALTSTGHLDVAYRLLLQTQCPSWLYPVTMGATTVWERWD HHHCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEHHCCHHHHHHHHH SMRPDGTINPGEMTSFNHYALGAVADWLHRTVAGLAPAAPGYRRLLVHPRLTPELTGAAA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHH THLTPYGKASVSWLRSAGHLRLDVHVPVGASAEVHVPGAEQPVTVGHGDHRWLVADPVSR HHCCCCCCHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCCCEEECCCCCEEEEECCCCC SEGR CCCC >Mature Secondary Structure MVQPCAPRFEHRTEPGPVLGLGAPAPRLSWTVTRAEEGWRQTAYEVQVAGKVFTVRSAEQ CCCCCCCHHHCCCCCCCEEECCCCCCCCEEEEECCHHHHHHCEEEEEECCEEEEEECCCE VLVPWPARPLRSRERAEVKVRVAYGDHWSPWSEAATVEAGLLDAADWTARFISPVDPGER EEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHCCEEHHCCCCCCHHHHHHCCCCCCCCC APVVVGHVEVPGPVRSARLYATAHGIYVPSINGRRVDDTVLAPGWTSYEHRLRYHVYDVT CCEEEEEEECCCCCCCEEEEEEECEEEEECCCCCCCCCEEECCCCCCHHHEEEEEEEEEE TLIRPGENVLEFVLGNGWYRGRLGWTNQRAIYGDRLALLAQLEITTFDGAVRVLATDGTW EEECCCHHHHHHHHCCCEEECCCCCCCCCEEECCCEEEEEEEEEEEECCEEEEEEECCCC HARPSEVLADDLYDGQTTDLRPHDAPATGVDIVEGDLTRLVAPDGPPIRPTSVLPARKVW CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCHHHH TSPAGKTLVDFGQNAVGWIRLRVRDLPAGTTVVVRHAEVLEDKELGTRPLRSARATDTWV CCCCCCHHHHCCCCCEEEEEEEEEECCCCCEEEEEEHHHHHHHHCCCCCHHHCCCCCEEE LSGHDEVLEPSLTLHGFRYAEVTGVPDLREQDIALVVVGSDLRRTGWFSSSHEQLNQLHE ECCCHHHHCCCEEECCEEEEEECCCCCCCCCCEEEEEECCCCHHCCCCCCCHHHHHHHHH NVVWSTRGNFVDLPTDCPQRDERLGWTGDIQIFGPTATFLYDTAGLLRSWLADLAAEQRP HEEEECCCCEEECCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC DGSVPHVVPEIDRAPEFRTPAAAWGDAATVVPWTLYQRTGDLQMLERQLPSMSAWVDKVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCHHHHHHHCCHHHHHHHHHH ALAGPDRLWRGGFQFGDWLDPTAPPENPGRAKADPDVVATAHFARSSWIVAESARLLGRA HHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCEEEEHHHHHHHHH ADAEKYRTLTDEVRAAFVRAFVTPQGRIHSDAQTLYALAIEWDLLPEAEQRVAAGHRLAE CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHH LVRDGGFHIATGFVGTPLVCDALTSTGHLDVAYRLLLQTQCPSWLYPVTMGATTVWERWD HHHCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEHHCCHHHHHHHHH SMRPDGTINPGEMTSFNHYALGAVADWLHRTVAGLAPAAPGYRRLLVHPRLTPELTGAAA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHH THLTPYGKASVSWLRSAGHLRLDVHVPVGASAEVHVPGAEQPVTVGHGDHRWLVADPVSR HHCCCCCCHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCCCEEECCCCCEEEEECCCCC SEGR CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA