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The map label for this gene is ltrA [H]

Identifier: 157964020

GI number: 157964020

Start: 5116263

End: 5117177

Strand: Reverse

Name: ltrA [H]

Synonym: Spea_4209

Alternate gene names: 157964020

Gene position: 5117177-5116263 (Counterclockwise)

Preceding gene: 157964023

Following gene: 157964019

Centisome position: 98.89

GC content: 44.15

Gene sequence:

>915_bases
ATGGACACTTTTAATGCTATTCCGATCTTTGTTGCTGTGGCAGATAGTGCCGGTTTTTCCAGTGCCGCTCGTGTATTGGG
TATTTCAAAGTCAGCAGTAAGCAAACGTATCACGCAATTAGAACAGCAGCTTGGGGCGCGTTTATTTTATCGCTCTACCC
GTAACCTTAGTCTGACTGAGGCTGGAGAGCGTTACTATCAATATGCATCTCAAGCCAATCGTGCCGCAAAGCAGGCTGAA
GATGCGGTGAGTGAGCTACAAGGTGAACCAAAAGGCTTGTTAAAAATTCAAGTGCCGATGACGATAGGGCAAATGCATTT
GGCCTCGCTTATCCCTGAGTTTATTGAGCGTTACCCTGAGATTCAGATTGACCTTGTGATGGATGATGATGAAATCAACC
TGATTGAACAGGGCTTTGACTTGGCGATTCGTGCCGATGACTTGGTCGATTCGAACTTAATCGCACGTCTGTTAGTTCCT
TTGCATAGCGTTGTTTGCGTATCTCCCTCGTTTTATCAAAAACACCGACAACAGCTTACATCTCCCTCCCAGTTAGCCGA
TCTAAACTGCATACTTTATAGCTATTCCAAAAATGCCGATGTATGGCAATTTAACGCTAACAATGGTGATGAATTCAAAG
TCAAAGTAACAGGAAACTATCGAGTTAATAATAGCGCTGCACTTAGAGATGCGGTTATAGCTGGTATGGGGGCGGCACGG
CTCCCCACATTTGTTGCTGGAGCTGCCATTCAGAGGGGGGATCTGGTTGCTATATTTAAAGACTATACAATGCCGAGCAA
AAAGCTCAACGCTATCTACCCTGAGCGTCACTATTTGCCTGCAAAAGTAAGAGTGTTTTTAGATTATGTTATTGAAAAAC
TAGGGAACGGATCTGCATATTGGGATGAATTTTAG

Upstream 100 bases:

>100_bases
ATTAAATTTGATGGGCTTACTTTAAATCATCGAGTTTGATAAACAATATGCTAACAAGTAGACTCAGAGTTGAGTTTTTC
TCAACCAATAGCAGGATTAA

Downstream 100 bases:

>100_bases
TGATTAACAGTTCTTATCAAACATTTACAATGGTCTTGGTTCTGATTTTATCCTGTACTGCTATTTAGCTGCTATTTAGC
TGCTATTTAGCTGCTTAAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDTFNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTEAGERYYQYASQANRAAKQAE
DAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPEIQIDLVMDDDEINLIEQGFDLAIRADDLVDSNLIARLLVP
LHSVVCVSPSFYQKHRQQLTSPSQLADLNCILYSYSKNADVWQFNANNGDEFKVKVTGNYRVNNSAALRDAVIAGMGAAR
LPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEKLGNGSAYWDEF

Sequences:

>Translated_304_residues
MDTFNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTEAGERYYQYASQANRAAKQAE
DAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPEIQIDLVMDDDEINLIEQGFDLAIRADDLVDSNLIARLLVP
LHSVVCVSPSFYQKHRQQLTSPSQLADLNCILYSYSKNADVWQFNANNGDEFKVKVTGNYRVNNSAALRDAVIAGMGAAR
LPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEKLGNGSAYWDEF
>Mature_304_residues
MDTFNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTEAGERYYQYASQANRAAKQAE
DAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPEIQIDLVMDDDEINLIEQGFDLAIRADDLVDSNLIARLLVP
LHSVVCVSPSFYQKHRQQLTSPSQLADLNCILYSYSKNADVWQFNANNGDEFKVKVTGNYRVNNSAALRDAVIAGMGAAR
LPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEKLGNGSAYWDEF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=33.1081081081081, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=30.7420494699647, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=31.6151202749141, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=29.757785467128, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=30.2013422818792, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=29.1095890410959, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787589, Length=282, Percent_Identity=29.4326241134752, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790011, Length=300, Percent_Identity=25.3333333333333, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=30.1324503311258, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=38.7931034482759, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=133, Percent_Identity=30.0751879699248, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789173, Length=296, Percent_Identity=25.6756756756757, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=250, Percent_Identity=27.2, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=301, Percent_Identity=25.9136212624585, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=148, Percent_Identity=26.3513513513513, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=240, Percent_Identity=25.8333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786448, Length=308, Percent_Identity=25, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786713, Length=146, Percent_Identity=35.6164383561644, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=29.2682926829268, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33824; Mature: 33824

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTFNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTE
CCCCCCEEEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AGERYYQYASQANRAAKQAEDAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
IQIDLVMDDDEINLIEQGFDLAIRADDLVDSNLIARLLVPLHSVVCVSPSFYQKHRQQLT
EEEEEEECCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
SPSQLADLNCILYSYSKNADVWQFNANNGDEFKVKVTGNYRVNNSAALRDAVIAGMGAAR
CHHHHCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECEEECCCHHHHHHHHHCCCHHH
LPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEKLGNGSAY
HHHHHHHHHCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
WDEF
CCCC
>Mature Secondary Structure
MDTFNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTE
CCCCCCEEEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AGERYYQYASQANRAAKQAEDAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
IQIDLVMDDDEINLIEQGFDLAIRADDLVDSNLIARLLVPLHSVVCVSPSFYQKHRQQLT
EEEEEEECCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
SPSQLADLNCILYSYSKNADVWQFNANNGDEFKVKVTGNYRVNNSAALRDAVIAGMGAAR
CHHHHCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECEEECCCHHHHHHHHHCCCHHH
LPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEKLGNGSAY
HHHHHHHHHCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
WDEF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]