Click here to switch to the map view.

The map label for this gene is ytrA [H]

Identifier: 157964000

GI number: 157964000

Start: 5084582

End: 5084956

Strand: Reverse

Name: ytrA [H]

Synonym: Spea_4189

Alternate gene names: 157964000

Gene position: 5084956-5084582 (Counterclockwise)

Preceding gene: 157964005

Following gene: 157963999

Centisome position: 98.27

GC content: 48.53

Gene sequence:

>375_bases
ATGTTAGAACAACTAAATGTCAACCCTAGTAGTGGTGAACCCATATATCGACAATTGAGCGAGCAGATTGTGCGTTTGAT
TGTGGGCGGCCAGCTGCAAAGTGATCAAGTATTACCGTCTGTGCGCCAGATGGCAGAACACCTTACTGTTAATCCGATGA
CGGTATCGCGTGCGGTCCAGCAACTCGTCGAACAAGGCTGGTTGGAACGTCGCCGTGGTCAGCCCACTCGGGTGGCTCAA
AGAGAGCAAAATGAAACTAATAACAGTGGCCAACTCATCTTTCCTCAAGTAGATGCACTTATTAAGCAAGCGCAGCAGCT
AGGGATAGATTTAGAAGGGTTACAAACCTTGCTGGGAGAACGCTGGCAAAAGTAG

Upstream 100 bases:

>100_bases
CATGGAGCATGATACTGATTCCTTTTTGCAATTTTGCGTATCTATGTTAACTTTGTACTGTATCGGTGTATCAATGTATT
AATACAGTAACTGAAGGCTA

Downstream 100 bases:

>100_bases
CACCAAGCTGCATAAGTGATAAGCAGGACTAAAGGACAATTTTCGATGGAAATGAACGAAACGCCGACCTTAGCATTTAC
ACAGGTAAGCAAGAGTTTTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MLEQLNVNPSSGEPIYRQLSEQIVRLIVGGQLQSDQVLPSVRQMAEHLTVNPMTVSRAVQQLVEQGWLERRRGQPTRVAQ
REQNETNNSGQLIFPQVDALIKQAQQLGIDLEGLQTLLGERWQK

Sequences:

>Translated_124_residues
MLEQLNVNPSSGEPIYRQLSEQIVRLIVGGQLQSDQVLPSVRQMAEHLTVNPMTVSRAVQQLVEQGWLERRRGQPTRVAQ
REQNETNNSGQLIFPQVDALIKQAQQLGIDLEGLQTLLGERWQK
>Mature_124_residues
MLEQLNVNPSSGEPIYRQLSEQIVRLIVGGQLQSDQVLPSVRQMAEHLTVNPMTVSRAVQQLVEQGWLERRRGQPTRVAQ
REQNETNNSGQLIFPQVDALIKQAQQLGIDLEGLQTLLGERWQK

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14080; Mature: 14080

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQLNVNPSSGEPIYRQLSEQIVRLIVGGQLQSDQVLPSVRQMAEHLTVNPMTVSRAVQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
QLVEQGWLERRRGQPTRVAQREQNETNNSGQLIFPQVDALIKQAQQLGIDLEGLQTLLGE
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHH
RWQK
HCCC
>Mature Secondary Structure
MLEQLNVNPSSGEPIYRQLSEQIVRLIVGGQLQSDQVLPSVRQMAEHLTVNPMTVSRAVQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
QLVEQGWLERRRGQPTRVAQREQNETNNSGQLIFPQVDALIKQAQQLGIDLEGLQTLLGE
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHH
RWQK
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]